Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05245 ATGGCATCACAAAACCCACAGCCCCATTTCCATGATTACCTTCCTTTCATGGCCAACAAGCTTGGCGGGGACGGCCTCATAGATGAGCTCTGCAATGGGTTCAACCTCTTGAAGGATTCTGACAAAGGGGTCATCACTTTCGACAGTCTCAAGAGGAATTCTGCTTTGATGGGTCTTCAAGGCTTCAGCGATGAGGATCTTCACTCTATGCTCAGGCAAGGTGATTTTGATGGCGATGGAGCGCTCAACCAGTTGGAGTTCTGTGTCTTGATGTTTAGATTGAGCCCTGAACTTATGGAGGGCTCTAAATTGTGGTTGGAGGAAGCCCTTCAACAAGAAATTAAAGATGATTATTGA 357 0.465 MASQNPQPHFHDYLPFMANKLGGDGLIDELCNGFNLLKDSDKGVITFDSLKRNSALMGLQGFSDEDLHSMLRQGDFDGDGALNQLEFCVLMFRLSPELMEGSKLWLEEALQQEIKDDY. 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05245 118 Gene3D - 8 118 - -
Seca4g05245 118 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Seca4g05245 118 Pfam EF-hand domain pair 42 93 IPR002048 GO:0005509
Seca4g05245 118 ProSitePatterns EF-hand calcium-binding domain. 75 87 IPR018247 -
Seca4g05245 118 PANTHER CALCIUM-BINDING PROTEIN KIC 8 116 IPR044205 GO:0005509
Seca4g05245 118 SUPERFAMILY EF-hand 5 91 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05245 Seca-Chr4 98014280 98014636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05245 2 113 EF-hand Containing Proteins AT4G27280 62.832 3.07e-50 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05245 K24345 - gmx:100527035 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05245 4 98014280 98014636 Seca4g05245 4 98014280 98014636 ECH