Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1548 ATGCATCGTTCCTTGGCGATGAACATCCCATCTAGGTTTCTCGGCCAACAAATGCAGACACAGGTGGACCAAGTTTTGCGAAAACGAGTTCTTGTTGATCCCTGTGATGTGTTCATAAACCACAGAAGCTTGGACACAAAAACAACTGTGGCTGCTCCTATTTATGATCATCTACGCAGACATGGGTTTCAGCCTTTTCTGGACAACAAGACTCTGAAGCCAGGTGACAAACTGTTCGATAAAATTAACAGTACAATCTTGGAGTGCAAACTAGGGTTAGCTCTGATATCACCACGCTACTGTGACTCCTACTTTTGTCTTCACGAGCTTGCCCTTCTCATGGAGTGCAAAAAGAAGGTGATACCCCTCTTCGTTGACATTAAACCATCGCAATTGCGCGTCATCAACAACAGAAAATGGACCCTCGAGGACCACCATCGCTTCAAATTCGCCATTGAAGAAGCAAAGCACACTGTGGGACTTACTCTCAACTCTGCACAAGGGAACTTCTCCGGTATTGTGACTAGTGCTTCTGATATCATCATCGAGAGCTTAATAGAGCTTGAGGAAGAAGAGGTGATGATGCAGCATTCATACTTGCCAATTAGCTAA 612 0.4477 MHRSLAMNIPSRFLGQQMQTQVDQVLRKRVLVDPCDVFINHRSLDTKTTVAAPIYDHLRRHGFQPFLDNKTLKPGDKLFDKINSTILECKLGLALISPRYCDSYFCLHELALLMECKKKVIPLFVDIKPSQLRVINNRKWTLEDHHRFKFAIEEAKHTVGLTLNSAQGNFSGIVTSASDIIIESLIELEEEEVMMQHSYLPIS* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1548 203 SMART till_3 34 180 IPR000157 GO:0007165
Pvu11g1548 203 Pfam TIR domain 37 140 IPR000157 GO:0007165
Pvu11g1548 203 Gene3D - 10 159 IPR035897 -
Pvu11g1548 203 SUPERFAMILY Toll/Interleukin receptor TIR domain 35 156 IPR035897 -
Pvu11g1548 203 ProSiteProfiles TIR domain profile. 33 156 IPR000157 GO:0007165
Pvu11g1548 203 PANTHER COP-1 INTERACTING PROTEIN 1 203 - -
Pvu11g1548 203 PANTHER COP1-INTERACTING PROTEIN-RELATED 1 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1548 Pvu-Chr11 39094479 39098247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1548 37 164 Miscellaneous Gene Families AT1G57670 29.167 5.07e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1548 - - gmx:100526930 325.865