Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01331 ATGGCATCATCACAGAACCCACATCCCCATTTCCAAGACTGCCTTCCCCTTATGGCCAACAAGCTCGGCGGCGACGGCCTCATCGACGAGCTCTGCAACGGCTTCAACCTGCTCAAGGACCCCCACACGGGCCTCATAACCTTCGAGAGCCTCAAGAGGAACGCCGCTTTGTTGGGCCTGGATGGGCTCGCCGATGAGGACCTCCGCTCTATGCTCCGGCAGGGCGATTTCGACGGCGATGGGGCGCTGAGCCAGTTGGAGTTCTGCGTTTTGATGTTTAGGTTGAGCCCTGAACTCATGGAGGGGTCTAAGCTGTGGCTCGAGGAAGTGCTGCAACAAGAACCTGAATGttga 354 0.5763 MASSQNPHPHFQDCLPLMANKLGGDGLIDELCNGFNLLKDPHTGLITFESLKRNAALLGLDGLADEDLRSMLRQGDFDGDGALSQLEFCVLMFRLSPELMEGSKLWLEEVLQQEPEC 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01331 117 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Cca04g01331 117 Pfam EF-hand domain pair 42 94 IPR002048 GO:0005509
Cca04g01331 117 PANTHER CALCIUM-BINDING PROTEIN KIC 2 114 IPR044205 GO:0005509
Cca04g01331 117 SUPERFAMILY EF-hand 28 95 IPR011992 -
Cca04g01331 117 ProSiteProfiles EF-hand calcium-binding domain profile. 63 98 IPR002048 GO:0005509
Cca04g01331 117 Gene3D - 9 116 - -
Cca04g01331 117 PANTHER CALCIUM-BINDING PROTEIN KRP1 2 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01331 Cca-Chr4 17049719 17050688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01331 3 114 EF-hand Containing Proteins AT4G27280 63.717 2.77e-47 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01331 K24345 - gmx:100527035 187.578