Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00218 ATGGCATCACAAACCCCACAACACTCTCATTTCCATGATTCCCTACCTTTCATGGCCAACAAGCTAGGTGGAGATGGTCTAATAGATGAACTCTGTAACGGGTTCAACCTCTTGAAGGATTGTGATAAAGAGGTCATCACTTTTGAAAGCCTGAAGAGGAATTCAGCTTTGTTGGGATTAAATGGTTTGAGCGATGAAGATCTTTTTTCCATGGTAATGGAAGGTGATTTTGATGGAGATGGTGCTCTTAACCAAATGGAGTTTTGTGTTTTGATGTTTAGATTGAGCCCTGAACTCATGGAGGGGTCTCAATTGTGGTTGGAAGAGGTCCTTCAACAATAA 342 0.4152 MASQTPQHSHFHDSLPFMANKLGGDGLIDELCNGFNLLKDCDKEVITFESLKRNSALLGLNGLSDEDLFSMVMEGDFDGDGALNQMEFCVLMFRLSPELMEGSQLWLEEVLQQ 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00218 113 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Vifa4g00218 113 Gene3D - 8 113 - -
Vifa4g00218 113 ProSiteProfiles EF-hand calcium-binding domain profile. 63 98 IPR002048 GO:0005509
Vifa4g00218 113 PANTHER CALCIUM-BINDING PROTEIN KIC 8 112 IPR044205 GO:0005509
Vifa4g00218 113 Pfam EF-hand domain pair 43 94 IPR002048 GO:0005509
Vifa4g00218 113 SUPERFAMILY EF-hand 27 101 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00218 Vifa-Chr4 42899635 42899976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00218 2 113 EF-hand Containing Proteins AT4G27280 64.602 9.86e-45 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00218 K24345 - gmx:100527035 186.422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00218 4 42899635 42899976 Vifa4g00218 4 42899635 42899976 ECH