Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00368 ATGATTGCTCTTATGATTAAACTCGTGAGTGATAAAAGAGAAGAAGCGCATCTTCCACGAAGGAGACGAGTGTTTCAACTGTCCAATGAAGAGGGTGTGTCGTGTCCCAACGAAGGCCGCAAGAAGCTACACTCTTTCCCTTCCATGATTGCAAGACTAGGTGTAGAAGGGTTCATTGGGGAGCTCTGCGACGGGTTTCGTTTGCTCATGGACGTGAACATGGGCCTCATCACGTTCGAGAGCTTGAAGGTGAGCACCTTCTTGCTCGGTTTGGAGGTGAGGGATGATGACCTGTTGTGCATGCTCATGGAGGGTGATTTGGATGGAGATGGAGCTCTTAACCAAATGGAATTTTGCATTCTCATGTTTAGGTTGAGTCCTTGCTTGATGGATATGCAAGGTAATAATGAGTATCCAGTGCATGCTAGAGTAATTAACCTTCTATAA 447 0.4609 MIALMIKLVSDKREEAHLPRRRRVFQLSNEEGVSCPNEGRKKLHSFPSMIARLGVEGFIGELCDGFRLLMDVNMGLITFESLKVSTFLLGLEVRDDDLLCMLMEGDLDGDGALNQMEFCILMFRLSPCLMDMQGNNEYPVHARVINLL 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00368 148 ProSitePatterns EF-hand calcium-binding domain. 106 118 IPR018247 -
Vimu5g00368 148 SUPERFAMILY EF-hand 61 140 IPR011992 -
Vimu5g00368 148 Pfam EF-hand domain pair 75 124 IPR002048 GO:0005509
Vimu5g00368 148 Gene3D - 44 141 - -
Vimu5g00368 148 PANTHER CALCIUM-BINDING PROTEIN KIC 45 133 IPR044205 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00368 Vimu-Chr5 3315773 3316446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00368 40 131 EF-hand Containing Proteins AT4G27280 58.947 5.65e-30 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00368 K24345 - gmx:100795879 174.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00368 5 3315773 3316446 Vimu5g00368 5 3315773 3316446 ECH