Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1180 ATGGAACCATCCAAAAACTCGCAGAAGCCCTCACATTTCCATGACTACCTCCCCGTGATGGCGAACAAGCTCGGCGGGGACGGCCTCATCGATGAGCTCTGCAACGGCTTCAACCTGCTCAAGGACTCCGACAGAGGGGTGATAACCTTTGAGAGCCTCAAGAGGAACGCTGCTCTGCTGGGCCTGCAAGGACTCGGCGATGAGGACCTTCGGTCGATGCTCGGGCAGGGTGATTTCGACGGCGATGGCGCGCTGAGCCAGCTGGAGTTCTGTGTTTTGATGTTCAGGCTCAGCCCTGAGCTCATGGAGGGGTCCAAGTTGTGGCTGGAGGAGGTGCTTCAGCAGGAACTTGAACATTGA 360 0.575 MEPSKNSQKPSHFHDYLPVMANKLGGDGLIDELCNGFNLLKDSDRGVITFESLKRNAALLGLQGLGDEDLRSMLGQGDFDGDGALSQLEFCVLMFRLSPELMEGSKLWLEEVLQQELEH* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1180 119 Pfam EF-hand domain pair 45 96 IPR002048 GO:0005509
Gso12g1180 119 Gene3D - 11 119 - -
Gso12g1180 119 PANTHER CALCIUM-BINDING PROTEIN KIC 7 118 IPR044205 GO:0005509
Gso12g1180 119 PANTHER CALCIUM-BINDING PROTEIN KRP1 7 118 - -
Gso12g1180 119 ProSitePatterns EF-hand calcium-binding domain. 78 90 IPR018247 -
Gso12g1180 119 ProSiteProfiles EF-hand calcium-binding domain profile. 65 100 IPR002048 GO:0005509
Gso12g1180 119 SUPERFAMILY EF-hand 30 97 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1180 Gso-Chr12 18593195 18593848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1180 3 117 EF-hand Containing Proteins AT4G27280 62.069 8.80e-48 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1180 K24345 - gmx:100527035 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1839 12 42124218 42124838 Gso12g1180 12 18593195 18593848 PCT
Gso11g3022 11 46099667 46100247 Gso12g1180 12 18593195 18593848 PCT
Gso12g1180 12 18593195 18593848 Gso12g1839 12 42124218 42124838 PCT
Gso12g1180 12 18593195 18593848 Gso11g3022 11 46099667 46100247 PCT