Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01729 ATGGCATCACAAAACCCACAACCCCATTTCCATGATAACCTTCCTTTCATGGCCAACAAGCTTGGTGGGGATGGCCTCATAGATGAACTCTGCAATGGGTTCAACCTCTTGAAGGATTCTGATAAAGGGGTAATCACTTTTGATAGCCTCAAGAGGAATTCAGCTTTGTTGGGCCTGCAAGGATTCAGTGATGAGGATCTTCGATCCATGCTTAGGCAAGGTGATTTTGATGGCGATGGGGCTCTTAACCAGTTGGAGTTCTGTGTCTTGATGTTTAGATTGAGCCCTGAGCTTATGGAAGGGTCTAAATTGTGGTTGGAGGAAGCCCTTCAACAAGAACTTAAAGATCATTTTTGA 357 0.4454 MASQNPQPHFHDNLPFMANKLGGDGLIDELCNGFNLLKDSDKGVITFDSLKRNSALLGLQGFSDEDLRSMLRQGDFDGDGALNQLEFCVLMFRLSPELMEGSKLWLEEALQQELKDHF* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01729 118 Pfam EF-hand domain pair 42 93 IPR002048 GO:0005509
Rops3g01729 118 Gene3D - 8 118 - -
Rops3g01729 118 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Rops3g01729 118 PANTHER CALCIUM-BINDING PROTEIN KIC 8 117 IPR044205 GO:0005509
Rops3g01729 118 ProSitePatterns EF-hand calcium-binding domain. 75 87 IPR018247 -
Rops3g01729 118 SUPERFAMILY EF-hand 26 100 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01729 Rops-Chr3 29212220 29212751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01729 2 114 EF-hand Containing Proteins AT4G27280 64.035 4.22e-50 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01729 K24345 - gmx:100500465 201.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01729 3 29212220 29212751 Rops3g01729 3 29212220 29212751 ECH