Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03906 ATGGAACTTGACTATGGCTTTGACTTTGAGGACTGTTTCCCCTCAATGATTGCGAGGTTGGGGGCTGAAGGGTTCATTGGGGAGCTTTGCAACGGGTTTAGGTTGCTCATGGATGTGAACATGGGTCTCATCACGTTTGAGAGCTTGAAGATGAGCTCTTACATGCTTGGTTTAGAGGTGAGGGATGATGAGTTGTTGTGCATGTTGATGGAGGGTGATTTGGATGGAGATGGGGCCCTTAACCAGATGGAGTTTTGCATTCTCATGTTTAGGTTGAGTCCATGCTTGATGGACATGCAAGGAATGCTAGTGGACGAGGCTCAAGGAAGGTATGAAGTGAGGAAGGAAGGCTACACACATTTCTTCTTTACTCATTTTCCTAAAGAGTATAAAGTAAGAGATACATGGAAGGTATCTAAAAGGTATGAAAATGTTAAACAAGTTGTGACTCCTAATAAAAGGGATAGACGAGGTCATCGGTTTGAATTTGTGCATTTCTCGGAGGATAGAGATGCTAGAATGATGGCTTTGAAATTGGATAATATTTTCATAAGGGACTTGAAGTTGTGGGTAAATTGCCCAAAGTTTCAAACAAAAAGCAAATCTATGGAGACTGGCGGTCTCAAACGGAAATGA 636 0.423 MELDYGFDFEDCFPSMIARLGAEGFIGELCNGFRLLMDVNMGLITFESLKMSSYMLGLEVRDDELLCMLMEGDLDGDGALNQMEFCILMFRLSPCLMDMQGMLVDEAQGRYEVRKEGYTHFFFTHFPKEYKVRDTWKVSKRYENVKQVVTPNKRDRRGHRFEFVHFSEDRDARMMALKLDNIFIRDLKLWVNCPKFQTKSKSMETGGLKRK 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03906 211 SUPERFAMILY RNA-binding domain, RBD 109 197 IPR035979 GO:0003676
Pste1g03906 211 Gene3D - 119 204 IPR012677 -
Pste1g03906 211 ProSitePatterns EF-hand calcium-binding domain. 73 85 IPR018247 -
Pste1g03906 211 PANTHER CALCIUM-BINDING PROTEIN KIC 8 108 IPR044205 GO:0005509
Pste1g03906 211 Pfam EF-hand domain pair 42 91 IPR002048 GO:0005509
Pste1g03906 211 SUPERFAMILY EF-hand 24 95 IPR011992 -
Pste1g03906 211 Gene3D - 7 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03906 Pste-Chr1 19976425 19980534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03906 8 107 EF-hand Containing Proteins AT4G27280 57.843 3.48e-32 112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03906 1 19976425 19980534 Pste1g03906 1 19976425 19980534 ECH