Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01474 ATGATGTCCAGATCGTATACAAATCTTTTAGATTTGGCCTCTGGGAATTTCCCGGCAATGGGGGGCAGGGAGTCTAGGGAGAGGAGGCGGATGCCGAGGGTTATGAGTGTCCCAGGGTTTCTCACTGAGGTAGATGATGACCAGGCAGTTAGTGTTTCCTCTGATAACCCGTCGACAGTTACTACAGATAGAATGATCATTGTGGCTAACCAGTTACCGTTGAAGGCAAAGCGAAGAGAGGACAACAAAGGGTGGTCTTTCAGTTGGAATGAAGATTCGTTACTTTTACAGCTTAAGGATGGACTTCCGGATGACATGGAAGTTCTTTATGTTGGTTCCTTACGCGTTGACATTGATCCAGCAGAACAGGATGACGTGTCTCAGAATTTATTGGATAAATTCAAATGTGTTCCGACATTTCTACCTGCTGACGTTTTGGCAAAATTTTATGATGGTTTTTGTAAAAGGCAGTTGTGGCCACTTTTTCATTACATGTTACCATTTTCAACAGACAAAAGCCACCGATTTGATCGTACCATGTGGGAAGCTTATGTGCTAGCAAACAAGCTATTTTTTCAGAAAGTAGTTGAAATAATAAACCCTGAGGATGATTACATTTGGATTCATGATTATCATTTGATGGTGTTGCCAACTTTTATAAGAAGGCGTTTTAACAGGGTTAAAATGGGATTTTTCCTGCATAGCCCCTTTCCATCATCAGAGATTTACAGGACTCTTCCTGTCAGGGAAGAGATACTGAAAGCTTTACTAAACTCTGATATCATCGGATTCCATACCTTTGACTATGCTCGTCATTTCCTTTCTTGCTGCAGTCGTATGTTGGGTCTGGAGTATCAGTCTAAGAGGGGTTATTTAGGATTGGAGTATTATGGAAGGACAATCAGTATTAAGATTATGCCTGTTGGGATTCACATGGGCCGGATTGATTCAGTCATGAGAATGGCAGTTGAGGAGACCGAGGTTAAGGAGCTCAAAAGGCAATTTGAAGGAAAAACTATCTTACTTGGTGTTGATGACATGGACATTTTTAAAGGCATAAATTTGAAGATTCTGGCGATGGAGCAGATGCTCAGACAACATCCCAAATGGCAAGGAAGAGCTGTTCTGGTCCAGATAGTTAATCCTGCTAGAGGTAAAGGGATACATCTGGAGGAGATACATGCTGAAATACAAGAAAGCTGCACCCGGATCAACAGAGTGTTTGGGCGGCCTGGTTATGAACCTATTGTTTTTATTGATAGAGCAGTATCTATTGCTGAAAAAGTTGCCTATTACAGCATTGCAGAGTGTGTTATTGTCACAGCTGTAAGGGATGGAATGAACCTAACTCCTTATGAATACGTTGCTTGTAGACAGGGAATATCTGGTTCTGAATCATGTTCCAATGTCAGTGACCCAAAGAAGAGTATGCTAGTGATATCAGAATTTATTGGGTGTTCTCCATCACTTAGTGGGGCAATCCGTGTCAATCCATGGAATGTTGAAGCAACTTCAGAGGCAATGAATGAGGCCATCTCAATGAGTGATGGGGAGAAACAGTTGCGGCATGAGAAGCATTACCGGTATGTCAGCACCCATGATGTGGCTTACTGGTCACGTAGTTTTTTGCAAGACATGGAGCGGGCTTGCACAGACCTTCTAAGGAAAAGATGTTGGGGAATAGGTCTTAGCTTTGGATTTAGAGTTGTGGCACTTGACCCTAATTTTAAAAAGCTGTCGATTGATGCTATGGTTTCAGCTTACAAGAGAGCAAAGAGTAGGGCCATTTTGTTGGATTATGATGGTACTGTGATGCCGCAGAACTCCATTAATAAGAGTCCAAGCAAGGAGGTCTTATCTATAATGGAATCACTTAGTGCAGACCCCAAAAATATTGTTTTCATTGTTAGTGGAAGGGGAAGAAATAGCTTAAGTGATTGGTTTGCTCCCTGCAAAAAACTTGGAATTGCCGCAGAACATGGGTACTTCTTGAGATGGGGCCACAATGGAGAATGGGAGATTTGTGGTAAGTCCTCCGACTTTGGATGGATGCAGATAGCTGAACCTGTGATGAAACTGTATACAGAGGCAACTGATGGTTCCTCAATTGAAAGAAAAGAAAGTGCTTTAGTCTGGCAGTACCGTGATGCAGACCTTGGTTTTGGATCTGCTCAGGCTAAGGAAATGTTAGATCATCTAGAAAGTGTTTTGGCTAATGAGCCTGTTGCTGTGAAGAGTGGCCAGTTTATTGTTGAAGTAAAACCACAGGATGTGAGCAAAGGTTTGGTGGCCGAAAGGATATTTTCGTCAATGGAAGGTAAAGGCAACCAGGCTGACTTTGTGCTGTGTGTTGGTGATGACAGATCAGATGAGGACATGTTTGAAATAGTTAGTAGTGCAATCTCAAGGAATATTCTTGCCACCAATGCTTCCGTGTTTGCCTGTACGGTTGGACAAAAGCCAAGCAAAGCAAAGTATTATCTGGACGATACAAGTGAGGTAGCATGCATGCTAGAATCTTTGGCCGAAGAATCAGATTCTTCACCCTGCATAAAAGAAACTGGGGATTCCTCTAGGAGGCAAGTATGA 2589 0.4249 MMSRSYTNLLDLASGNFPAMGGRESRERRRMPRVMSVPGFLTEVDDDQAVSVSSDNPSTVTTDRMIIVANQLPLKAKRREDNKGWSFSWNEDSLLLQLKDGLPDDMEVLYVGSLRVDIDPAEQDDVSQNLLDKFKCVPTFLPADVLAKFYDGFCKRQLWPLFHYMLPFSTDKSHRFDRTMWEAYVLANKLFFQKVVEIINPEDDYIWIHDYHLMVLPTFIRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIDSVMRMAVEETEVKELKRQFEGKTILLGVDDMDIFKGINLKILAMEQMLRQHPKWQGRAVLVQIVNPARGKGIHLEEIHAEIQESCTRINRVFGRPGYEPIVFIDRAVSIAEKVAYYSIAECVIVTAVRDGMNLTPYEYVACRQGISGSESCSNVSDPKKSMLVISEFIGCSPSLSGAIRVNPWNVEATSEAMNEAISMSDGEKQLRHEKHYRYVSTHDVAYWSRSFLQDMERACTDLLRKRCWGIGLSFGFRVVALDPNFKKLSIDAMVSAYKRAKSRAILLDYDGTVMPQNSINKSPSKEVLSIMESLSADPKNIVFIVSGRGRNSLSDWFAPCKKLGIAAEHGYFLRWGHNGEWEICGKSSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADLGFGSAQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQDVSKGLVAERIFSSMEGKGNQADFVLCVGDDRSDEDMFEIVSSAISRNILATNASVFACTVGQKPSKAKYYLDDTSEVACMLESLAEESDSSPCIKETGDSSRRQV 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01474 862 Gene3D Glycogen Phosphorylase B; 57 318 - -
Phco9g01474 862 NCBIfam trehalose-phosphatase 591 842 IPR003337 GO:0003824|GO:0005992
Phco9g01474 862 Pfam Glycosyltransferase family 20 64 547 IPR001830 GO:0003824|GO:0005992
Phco9g01474 862 FunFam Trehalose-6-phosphate synthase 2 677 756 - -
Phco9g01474 862 NCBIfam HAD-IIB family hydrolase 596 800 IPR006379 -
Phco9g01474 862 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 64 551 - -
Phco9g01474 862 Gene3D Glycogen Phosphorylase B; 319 531 - -
Phco9g01474 862 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 57 316 - -
Phco9g01474 862 FunFam Alpha,alpha-trehalose-phosphate synthase 318 531 - -
Phco9g01474 862 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 723 854 - -
Phco9g01474 862 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 32 843 IPR001830 GO:0003824|GO:0005992
Phco9g01474 862 MobiDBLite consensus disorder prediction 843 862 - -
Phco9g01474 862 SUPERFAMILY HAD-like 594 842 IPR036412 -
Phco9g01474 862 CDD HAD_TPP 595 835 - -
Phco9g01474 862 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 593 710 - -
Phco9g01474 862 CDD GT20_TPS 64 547 IPR001830 GO:0003824|GO:0005992
Phco9g01474 862 Gene3D - 722 852 IPR023214 -
Phco9g01474 862 Gene3D - 593 694 IPR023214 -
Phco9g01474 862 Pfam Trehalose-phosphatase 597 832 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01474 Phco-Chr9 34339612 34343453 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01474 9 34339612 34343453 Phco9g01474 9 34339612 34343453 ECH