Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01198 ATGAGTTCATTTAGCCAAAACAACCATCTTTTAGTTCTGCTCCTTGTTTTTACTGTGTGGACATGCCACGTAATGTCTCGCAGGTTGCCTCAGGCAACCTCGTCAGAGAGACATGAGAAGTGGATGGCACAGTATGGTAAGGTTTACAAGGATGCTGCTGAGAAAGAAAAACGTTTCCAAATATTCAAGAACAATGTGCAGTTCATTGAATCATTCAATGCTGCTGGGGACAAATCTTTCAACCTTAGCATCAACCAATTTGCAGACCTACATAATGAAGAGTTTAAGGCATTACTAAATAATGGTCAGAAGAATGCAAATAGGGTTGGGACAGTAACAGAAACATCGTTTAGGTATAACAATATAACTAAGGTTCCTGCTAGCATGGACTGGAGGAAAAAAGGTGCTGTTACTCCAATCAAGGACCAAGGCAGATGTGGTAGTTGCTGGGCCTTTTCAACTGTGGCTACGATCGAGGGTCTCCACCAAATAACTACAGGTGAACTGGTATCCCTATCAGAACAAGAACTGGTGGATTGTGTTAAAGGAAAGAGTAAAGGATGCAAAGGTGGTTTTATGGAGGATGCCTTTGAATTTGTTGCGAAGAAAGGAGGCTTAGCAACCGAAGAATATTACCCCTACAGGGAAAGCAATAAGACTTGTAAAGTCAAGAAGGAAGGTCATGGTGTTGCTGAGATTAAAGGGTATAGGAATGTTACTGCTAACAGTGAAAAAGCACTCCTGAAAGCCGTGGCACATCAACCAGTATCAGTCTATATTGACGGTGGAGATTCTGCTTTCCAATTCTACTCAAGTGGGATATTTACAGGAAAGTGTGGAACTAATCTAAACCATGCTGTTGCAGTAGTTGGTTATGGGAAAGCTCGTGGTGCTGGTAAGTATTGGATAGTAAAGAATTCATGGGGAACTGAATGGGGTGAGAAAGGGTACATGAGGATGAAGAGAGATATACGTGCCAAGGAAGGTTTATGTGGAATTGCTATGAATGCTGCTTATCCTATTGCTTAG 1029 0.4179 MSSFSQNNHLLVLLLVFTVWTCHVMSRRLPQATSSERHEKWMAQYGKVYKDAAEKEKRFQIFKNNVQFIESFNAAGDKSFNLSINQFADLHNEEFKALLNNGQKNANRVGTVTETSFRYNNITKVPASMDWRKKGAVTPIKDQGRCGSCWAFSTVATIEGLHQITTGELVSLSEQELVDCVKGKSKGCKGGFMEDAFEFVAKKGGLATEEYYPYRESNKTCKVKKEGHGVAEIKGYRNVTANSEKALLKAVAHQPVSVYIDGGDSAFQFYSSGIFTGKCGTNLNHAVAVVGYGKARGAGKYWIVKNSWGTEWGEKGYMRMKRDIRAKEGLCGIAMNAAYPIA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01198 342 SMART Inhibitor_I29_2 38 95 IPR013201 -
Vimu5g01198 342 Pfam Papain family cysteine protease 125 341 IPR000668 GO:0006508|GO:0008234
Vimu5g01198 342 Pfam Cathepsin propeptide inhibitor domain (I29) 38 95 IPR013201 -
Vimu5g01198 342 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 143 154 IPR000169 -
Vimu5g01198 342 SMART pept_c1 125 341 IPR000668 GO:0006508|GO:0008234
Vimu5g01198 342 FunFam Senescence-specific cysteine protease SAG39 19 342 - -
Vimu5g01198 342 CDD Peptidase_C1A 126 340 IPR039417 -
Vimu5g01198 342 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 283 293 IPR025660 -
Vimu5g01198 342 PRINTS Papain cysteine protease (C1) family signature 285 295 IPR000668 GO:0006508|GO:0008234
Vimu5g01198 342 PRINTS Papain cysteine protease (C1) family signature 301 307 IPR000668 GO:0006508|GO:0008234
Vimu5g01198 342 PRINTS Papain cysteine protease (C1) family signature 143 158 IPR000668 GO:0006508|GO:0008234
Vimu5g01198 342 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 33 335 IPR013128 GO:0008234
Vimu5g01198 342 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 301 320 IPR025661 -
Vimu5g01198 342 Gene3D Cysteine proteinases 25 342 - -
Vimu5g01198 342 SUPERFAMILY Cysteine proteinases 35 341 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01198 Vimu-Chr5 20664664 20665823 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01198 - - gmx:100814159 541.191