Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1308 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1309 . . . Aed5g0985 . . . . . . . . Arst3g01474 . . . . . . . . . . . . . . . . Lan7g0544 . . . . . . . . Lja3g2949 . . . . . . Phco9g01455 . . . . . . . . . . . . . . Vimu5g01184 . Vivi5g03015 .
Pvu11g1310 . . . Aed5g0984 . . . . . . . . . Bach9g01369 . Bva07g00999 . . . . . . . . . . . . . . . . . . . . . . Lja3g2950 . . . . . . Phco9g01456 . . . . . . . . . . . . . . . . Vivi5g03442 .
Pvu11g1311 Acco13g0533 Accr12g00473 Adu03g01518 Aed5g0983 . . Ahy13g0809 Aip03g01860 Alju13g1645 . Amo03g0453 Apr3g0986 . . Bisa02g1197 Bva07g01922 . . Dere14g0673 . Enph5g0436 Glsi13g1367 . . . . . . . . . . . Lasa7g02620 . . . . . . . . Mibi13g0526 . . Phco9g01457 Prci9g1762 . Pste1g03561 . . . Spst11g00886 . Sto12g0707 . . Tsu02g02978 . . Vimu5g01190 . . .
Pvu11g1312 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1313 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1314 . . . Aed5g0978 . . . . . . . Apr3g0985 Arst3g02072 . . Bva07g01921 . . . . . . . . . . . . . . Lan8g1452 . . Lasa7g02624 . . . . Lja3g2951 . . . . . . Phco9g01460 . . . . . . Spst11g00885 . . . . . . . Vimu5g01191 . . .
Pvu11g1315 . . . . . . . . . . . Apr3g0984 Arst3g02071 . . . Car06g01960 . . . . . . . . . . . . . . . . Lasa7g02625 . . . . . . . . . . . Phco9g01462 . . . . . . . . . . . . . . Vimu5g01193 . . .
Pvu11g1316 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1317 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Acco Acco13g0533 Chr13 3852371 3853768 -
Accr Accr12g00473 Chr12 4370894 4372289 -
Alju Alju13g1645 Chr13 34612956 34614403 +
Bisa Bisa02g1197 Chr02 20115704 20117637 -
Dere Dere14g0673 Chr14 7162997 7164350 +
Enph Enph5g0436 Chr5 3451589 3453820 -
Glsi Glsi13g1367 Chr13 30887465 30888907 +
Mibi Mibi13g0526 Chr13 7143959 7145555 -
Prci Prci9g1762 Chr9 29594005 29595878 +
Sto Sto12g0707 Chr12 4481532 4482802 -
Arst Arst3g01474 Chr3 13282368 13283608 +
Pvu Pvu11g1308 Chr11 27288887 27289315 +
Pvu Pvu11g1309 Chr11 27401350 27402948 +
Aed Aed5g0985 Chr5 7648893 7651562 -
Arst Arst3g01474 Chr3 13282368 13283608 +
Lan Lan7g0544 Chr7 4000963 4003243 -
Lja Lja3g2949 Chr3 53616830 53618743 +
Phco Phco9g01455 Chr9 33831173 33832570 +
Vimu Vimu5g01184 Chr5 20414881 20416182 -
Vivi Vivi5g03015 Chr5 118337802 118338244 +
Pvu Pvu11g1310 Chr11 27407922 27409893 +
Aed Aed5g0984 Chr5 7645607 7647904 -
Bach Bach9g01369 Chr9 11648107 11649748 -
Bva Bva07g00999 Chr07 11768060 11769608 +
Lja Lja3g2950 Chr3 53620630 53622932 +
Phco Phco9g01456 Chr9 33859665 33861346 +
Vivi Vivi5g03442 Chr5 126244203 126245883 -
Pvu Pvu11g1311 Chr11 27415356 27416876 +
Acco Acco13g0533 Chr13 3852371 3853768 -
Accr Accr12g00473 Chr12 4370894 4372289 -
Adu Adu03g01518 Chr03 23718577 23719702 -
Aed Aed5g0983 Chr5 7626636 7627854 +
Ahy Ahy13g0809 Chr13 8514603 8515461 -
Aip Aip03g01860 Chr03 23858184 23859307 -
Alju Alju13g1645 Chr13 34612956 34614403 +
Amo Amo03g0453 Chr03 8434963 8436088 +
Apr Apr3g0986 Chr3 24718206 24719329 +
Bisa Bisa02g1197 Chr02 20115704 20117637 -
Bva Bva07g01922 Chr07 17118650 17119767 +
Dere Dere14g0673 Chr14 7162997 7164350 +
Enph Enph5g0436 Chr5 3451589 3453820 -
Glsi Glsi13g1367 Chr13 30887465 30888907 +
Lasa Lasa7g02620 Chr7 535916007 535917111 +
Mibi Mibi13g0526 Chr13 7143959 7145555 -
Phco Phco9g01457 Chr9 33871461 33872968 +
Prci Prci9g1762 Chr9 29594005 29595878 +
Pste Pste1g03561 Chr1 16859788 16861140 -
Spst Spst11g00886 Chr11 32838226 32839134 +
Sto Sto12g0707 Chr12 4481532 4482802 -
Tsu Tsu02g02978 Chr02 32835678 32836819 -
Vimu Vimu5g01190 Chr5 20534363 20534896 +
Pvu Pvu11g1312 Chr11 27454765 27455119 -
Pvu Pvu11g1313 Chr11 27458000 27458354 -
Pvu Pvu11g1314 Chr11 27539197 27540319 +
Aed Aed5g0978 Chr5 7579279 7582060 +
Apr Apr3g0985 Chr3 24714795 24715907 +
Arst Arst3g02072 Chr3 25076409 25079020 -
Bva Bva07g01921 Chr07 17116351 17117469 -
Lan Lan8g1452 Chr8 21643523 21645143 +
Lasa Lasa7g02624 Chr7 535984863 535985988 -
Lja Lja3g2951 Chr3 53625135 53626567 +
Phco Phco9g01460 Chr9 33904768 33905891 +
Spst Spst11g00885 Chr11 32835109 32836218 -
Vimu Vimu5g01191 Chr5 20546403 20547525 +
Pvu Pvu11g1315 Chr11 27660030 27661354 +
Apr Apr3g0984 Chr3 24712253 24713362 +
Arst Arst3g02071 Chr3 25062814 25065795 -
Car Car06g01960 Chr06 19593973 19595104 -
Lasa Lasa7g02625 Chr7 535984863 535985309 -
Phco Phco9g01462 Chr9 33963856 33964978 +
Vimu Vimu5g01193 Chr5 20589274 20590397 +
Pvu Pvu11g1316 Chr11 27682685 27685545 -
Pvu Pvu11g1317 Chr11 27685827 27686512 -
Aed Aed5g0978 Chr5 7579279 7582060 +
Aed Aed5g0983 Chr5 7626636 7627854 +
Arst Arst3g02072 Chr3 25076409 25079020 -
Bach Bach9g01369 Chr9 11648107 11649748 -
Bva Bva07g00999 Chr07 11768060 11769608 +