Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01204 ATGGCCAAGTTACTGTCTCCAGTGTACACAGAACCTCTCAAATTGCATAAAACATCACAGAAATTTTGTTCCAGAAGCTCATGGGGGATGCTGCCGAAAACTGCAACCCACATGAACTGTGTGACACACAATGGCAAACGAAGAGGGTGTGGCAGGGTAAGAGTTGCTGCTGAGGAAAAATCGTTTTCAACCAGTGACACTGTTGCAGATGACTACTATGCAGTTCTGGGTCTGCTTCCAGATGCCACTCCTGCTCAGATCAAGAAGGCCTACTACAATTGCATGAAAGCTTGCCATCCAGATTTGAGTGGCAATGATCCTGAGACAACCAACTTCTGCACGTTCATCAATGAAGTGTATGGGGTGCTCAGTGATCCCATTCAGCGCATGATTTATGATGAAATTCATGGGTATTCTTTGACATCCATTAACCCTTTTCTGGATGAGTCTAGTCCAAAGGATCATGTTTTTGTTGATGAATTCAGCTGCATAGCAGGAGTTGGTAAAGCCAAAGAGACAATACTGACATCTAAATTTGCAATGCTTCATGTGTTGATAGGCCAAGATGTTGCTTCATTTTATTTGTTAGATCCTCAATTAGAACAATTCAAAGGCATGTTGTGTAATTGCTGCAAAAATTGTGCCAATGTGGCCTGTGATGTGTTTGGAATAGAGGAAGAATTTGGGAGAGCCAGAGTGTACAGCCAAAGCGGGAAACCTGACTTAGTTCAACAAGCTATTGATACTGCACAACTATCATTGCTTGAAGACGAAATGCGCCGTGTAGAAAGAGTCAATGTTGCCCTGATGCTTTCAGGAATGGGATCAGCATCAACTGATGTTTTCAGAATGGAACAAGCAAAATTGAGAATGATGAAGGAGAAAGGTTCTGATAAAGCAGATATGTTCTGGAACAATGTTTGGGGAAAAGAAAAAGACTTAAGTTCAGTACTATTATTTGAAGGTTATACTGTTCATGACAGTTACAGTCTTGAAAATGTTAACCATTATGCAGAGGAGGAAATCAAAGAAAGAGCAAAGAGGGCTGCTGCTGCTGCTAGAAGATGGAGGGAATACTCAAGAAGGGGTGTTGATAAGCCTCCAACATTCAAACTTCCAGAGGCAGCTTCAACCAAGGACTAG 1143 0.4199 MAKLLSPVYTEPLKLHKTSQKFCSRSSWGMLPKTATHMNCVTHNGKRRGCGRVRVAAEEKSFSTSDTVADDYYAVLGLLPDATPAQIKKAYYNCMKACHPDLSGNDPETTNFCTFINEVYGVLSDPIQRMIYDEIHGYSLTSINPFLDESSPKDHVFVDEFSCIAGVGKAKETILTSKFAMLHVLIGQDVASFYLLDPQLEQFKGMLCNCCKNCANVACDVFGIEEEFGRARVYSQSGKPDLVQQAIDTAQLSLLEDEMRRVERVNVALMLSGMGSASTDVFRMEQAKLRMMKEKGSDKADMFWNNVWGKEKDLSSVLLFEGYTVHDSYSLENVNHYAEEEIKERAKRAAAAARRWREYSRRGVDKPPTFKLPEAASTKD 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01204 380 ProSiteProfiles dnaJ domain profile. 71 136 IPR001623 -
Vimu5g01204 380 MobiDBLite consensus disorder prediction 358 380 - -
Vimu5g01204 380 PRINTS DnaJ domain signature 91 106 IPR001623 -
Vimu5g01204 380 PRINTS DnaJ domain signature 108 128 IPR001623 -
Vimu5g01204 380 PRINTS DnaJ domain signature 73 91 IPR001623 -
Vimu5g01204 380 SMART dnaj_3 70 128 IPR001623 -
Vimu5g01204 380 Gene3D DnaJ domain 54 145 IPR036869 -
Vimu5g01204 380 Pfam DnaJ domain 71 133 IPR001623 -
Vimu5g01204 380 CDD DnaJ 71 125 IPR001623 -
Vimu5g01204 380 SUPERFAMILY Chaperone J-domain 70 135 IPR036869 -
Vimu5g01204 380 PANTHER OS01G0730500 PROTEIN 3 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01204 Vimu-Chr5 21006293 21010301 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01204 - - gmx:100812547 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01204 5 21006293 21010301 Vimu5g01204 5 21006293 21010301 ECH