Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01201 CCTCGAAGGTTGCCTGAGGCCTTGTTATCGGAGAAACATGAGAAGTGGATGGCACATCATGGTAGGGTGTACAAGGACTCTGTCGAGAGGGAAAAACGGTTCCAAATATTCAAGAACAATTTGCAGGTCATTGAGTCCTTCAATGCTGCTGGGGACAAACCTTTCAACCTAAGCATTAACCGATTTGCTGACCTCCATAATGAAGAGTTTAAGGCTTTACTAATTAATGGTCAGAAGAAGGAACATAGCATATGGACAGCAACAGAAACATCATTTAGGTATGACAGTGTCACTGAGATTCCTGCTACCATGGACTGCAGGAAAAGAGGAAGTTGTTGGGCATTTTCAACTGTGGCTACAATTGAGGGTCTTCATCATATAACTAAAGATGAATTGGTATCCCTGTCCAAACAAGAACTGGTAGATTGTGTCAGAGGTGACAGCGAGGGATGCATTGGTGGTTATGTGGAAGATGCCTTTGAGTTTCTTGCTAAGAAAGGAGGAATAACAAGTGAAACAAAGTACCCTTACAAAGGGGTTAACAAGAGTTGTAAGGTTAAGAAGGAAAGTCATAGTGTAGCTAAGATCAAAAGATACGAGAAAGTTCCTGCTAACAGTAAAAAAGCACTCTTGAAAGCTGTGGCTCATCAACCAGTGTCAGCTTATGTGGAAGCTGGAGAATATGCTTTCCTGTTTTATTCAACTGGGATTTTTACAGGAAAGTGTGGAACATTAATTGATCATTCTGTTACAGTGGTTGGTTATGGAAAAGCTGAATATGGTACTAAGTATTGGCTAGTAAAGAATTCATGGGAACTGAATGGGGTGAGAAAGGGTACATGA 843 0.4104 PRRLPEALLSEKHEKWMAHHGRVYKDSVEREKRFQIFKNNLQVIESFNAAGDKPFNLSINRFADLHNEEFKALLINGQKKEHSIWTATETSFRYDSVTEIPATMDCRKRGSCWAFSTVATIEGLHHITKDELVSLSKQELVDCVRGDSEGCIGGYVEDAFEFLAKKGGITSETKYPYKGVNKSCKVKKESHSVAKIKRYEKVPANSKKALLKAVAHQPVSAYVEAGEYAFLFYSTGIFTGKCGTLIDHSVTVVGYGKAEYGTKYWLVKNSWELNGVRKGT 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01201 280 PRINTS Papain cysteine protease (C1) family signature 264 270 IPR000668 GO:0006508|GO:0008234
Vimu5g01201 280 PRINTS Papain cysteine protease (C1) family signature 106 121 IPR000668 GO:0006508|GO:0008234
Vimu5g01201 280 PRINTS Papain cysteine protease (C1) family signature 248 258 IPR000668 GO:0006508|GO:0008234
Vimu5g01201 280 SMART pept_c1 88 280 IPR000668 GO:0006508|GO:0008234
Vimu5g01201 280 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 9 272 IPR013128 GO:0008234
Vimu5g01201 280 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 246 256 IPR025660 -
Vimu5g01201 280 SUPERFAMILY Cysteine proteinases 8 271 IPR038765 -
Vimu5g01201 280 SMART Inhibitor_I29_2 13 70 IPR013201 -
Vimu5g01201 280 CDD Peptidase_C1A 110 271 IPR039417 -
Vimu5g01201 280 Pfam Papain family cysteine protease 97 277 IPR000668 GO:0006508|GO:0008234
Vimu5g01201 280 Pfam Cathepsin propeptide inhibitor domain (I29) 13 70 IPR013201 -
Vimu5g01201 280 Gene3D Cysteine proteinases 5 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01201 Vimu-Chr5 20782420 20783400 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01201 - - gmx:100817009 446.432