Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01475 ATGGCGATACGCAACTCGCTCAACGGACAATTTCTCCGCCGCAGCACCGTCGCTGGAGCAAGGTTTATGTCGTCTTCGTGGTTTCGGAGCATCGAGCCTGCTCCCAAGGATCCGATCCTCGGAGTCACCGAAGCTTTCCTCTCCGATCAGAGTCCAAACAAAGTCAACGTCGGAGTGGGTGCGTATCGCGATGACAACGGAAAACCTGTGGTTCTGGAATGCGTTAGAGAAGCAGAGCGGAGAATTGCAGGAGGCCAATTCATGGAGTATCTTCCTATTGGTGGAAGCATAAAAATGGTTGAAGAATCGCTCAAGCTGGCATACGGAGAAAACTCTGAGTTCATCAAGGATAAACGAATAGCTGCTGTGCAGGCTTTATCTGGGACTGGTGCATGTCGACTTTTTGCTGCATTTCAACAGAGATTTCATCCTAATTCCCGAATCTATATACCAGTGCCTACCTGGGTTAACCATCATAACATTTGGAGAGATGCTGGAGTGCCAATGAAGACATTCCGTTACTATCATCCCGAGTCTAAAGGACTGGATTTTGCAGGACTGATGGATGACATGAAGAATGCTCCAGATGGTTCCTTCTTTCTGCTTCATGCTTGTGCGCACAATCCTACTGGAGTAGATCCTTCAGAAGAACAATGGAGAGAGATCTCTTCCCAGATTAAGGCTAAGGGTCATTTCCCTTTCTTGGACATGGCATATCAAGGTTTTGCTAGTGGTGATCCAGAGAGAGATGCAAAAGCCATTAGGATTTTTCTGGAGGACGGTCATTTAATAGGACTTGCTCAGTCATATGCAAAAAATATGGGACTGTACGGCCAGCGAGTTGGATGCCTGAGTGTGCTCTGTGAAGATGAGAAACAAGCTGTGGCTGTGAAAAGTCAGTTACAGCTGATTGCTAGACCCATGTACAGTAACCCACCTCTCCATGGAGCGCTTATAGTTTCAACTGTCCTTGGTGATCCTGAGTTGAAGAAGTTATGGCTTAACGAAGTCAAGGTTATGGCAGATCGCATCATTGGAATGAGGACCACACTACGAGAGAACTTGGAAAAGAGGAATTCTCCTTTGCCCTGGCAGCACATAACCAATCAGATTGGTATGTTCTGCTACAGTGGATTGACACCGGAACAGGTTGATGTTATGACAAACAAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGTATGGCTGGTCTTAATACGGGCAATGTCGGATATGTTGCTGACGCTATCCATGAGGTTACAAAATCTTCCTAA 1278 0.4624 MAIRNSLNGQFLRRSTVAGARFMSSSWFRSIEPAPKDPILGVTEAFLSDQSPNKVNVGVGAYRDDNGKPVVLECVREAERRIAGGQFMEYLPIGGSIKMVEESLKLAYGENSEFIKDKRIAAVQALSGTGACRLFAAFQQRFHPNSRIYIPVPTWVNHHNIWRDAGVPMKTFRYYHPESKGLDFAGLMDDMKNAPDGSFFLLHACAHNPTGVDPSEEQWREISSQIKAKGHFPFLDMAYQGFASGDPERDAKAIRIFLEDGHLIGLAQSYAKNMGLYGQRVGCLSVLCEDEKQAVAVKSQLQLIARPMYSNPPLHGALIVSTVLGDPELKKLWLNEVKVMADRIIGMRTTLRENLEKRNSPLPWQHITNQIGMFCYSGLTPEQVDVMTNKFHIYMTRNGRISMAGLNTGNVGYVADAIHEVTKSS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01475 425 FunFam Aspartate aminotransferase 318 418 - -
Phco9g01475 425 CDD AAT_like 55 420 - -
Phco9g01475 425 PANTHER ASPARTATE AMINOTRANSFERASE 23 422 IPR000796 GO:0006520|GO:0008483
Phco9g01475 425 FunFam Aspartate aminotransferase 85 326 - -
Phco9g01475 425 PRINTS Aspartate aminotransferase signature 200 219 IPR000796 GO:0006520|GO:0008483
Phco9g01475 425 PRINTS Aspartate aminotransferase signature 299 324 IPR000796 GO:0006520|GO:0008483
Phco9g01475 425 PRINTS Aspartate aminotransferase signature 231 243 IPR000796 GO:0006520|GO:0008483
Phco9g01475 425 PRINTS Aspartate aminotransferase signature 367 385 IPR000796 GO:0006520|GO:0008483
Phco9g01475 425 SUPERFAMILY PLP-dependent transferases 25 423 IPR015424 -
Phco9g01475 425 Gene3D Aspartate Aminotransferase, domain 1 31 418 IPR015422 GO:0003824
Phco9g01475 425 Pfam Aminotransferase class I and II 53 418 IPR004839 GO:0009058|GO:0030170
Phco9g01475 425 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 269 282 IPR004838 GO:0003824|GO:0009058|GO:0030170
Phco9g01475 425 Gene3D - 85 326 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01475 Phco-Chr9 34402904 34412670 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01475 9 34402904 34412670 Phco9g01475 9 34402904 34412670 ECH