Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03420 ATGGCTATTCGCAATGTTCTCAACAGAAAATTCCTCAACCAGAGCTCCGTTACCGGAGCTAGATTCATGTCTTCGTGGTTCAGAAACATCGAACAGGCTCCCAAGGATCCGATCCTCGGAGTTACCGAAGCTTTTCTCGCTGATCAGAGTCCTAACAAAATCAATGTTGGAGTAGGTGCATATCGCGATGACAACGGAAAACCAGTGGTTTTGGGATGTGTTAGAGAAGCAGAGAAGAGAATTGCAGGAAACCAATTCATGGAGTATCTTCCTATGGGTGGAAGCTTACATATGGTTCAAGAATCACTGAAGCTGGCATATGGAGAGAACTCTGAGTTCATCAAGGATAAAAGAATAGCTGCAGTTCAGGCTTTATCAGGGACTGGTGCATGTCGACTTTTTGCCGCATTTCAACAGCGCTTTCATCCCAACTCTCAAATTTATATACCAGTTCCCACTTGGTCCAACCACCATAACATTTGGAGAGATGCTGGAGTGCCTATAAAGACATTCCGTTACTATCATCCCGAGTCTAAAGGACTGGATTTTTCTGGACTGCTGGAGGACATTAAGAATGCTCCCAGTGGTTCCTTCTTTTTGCTTCATGCTTGTGCTCACAATCCTACTGGGGTAGATCCTTCAGAAGAACAATGGCGAGAGATCTCTTCCCAAATAAAGGCTAAAGGTCATTTCCCTTTGTTTGACATGGCATATCAAGGTTTTGCTAGTGGCAATCCAGAAAGAGATGCAAAAGCCATCAGGATTTTCCTCGATGATGGTCATTCAATAGGACTTGCCCAATCATTCGCAAAAAATATGGGACTGTATGGCCAGAGAGTAGGATGCCTTAGCTTGCTTTGCGAAGATGAAAAACAAGCTGTGGCAGTAAAAAGCCAGTTGCAGTTGATTTCCAGACCCATGTACAGTAATCCACCTCTTCATGGAGCACTTGTTGTTTCAACTGTCCTTGGTGATCCAGAGTTGAAGAAGCAATGGCTCACAGAAGTTAAGGTTATGGCTGACCGCATCATTGGAATGAGGACTGCACTACGAGAGAACTTGGAAAATCTAGGGTCTCCTTTGCCATGGAACCACATAACCAATCAGATTGGCATGTTCTGCTACAGCGGTATGACACCAGAGCAAGTTGATCGTTTGACAAGCGAGTTTCACATTTACATGACTCGCAATGGCCGTATAAGTATGGCTGGTATTAATTCGGGCAACGTTGGATATATCGCTAATGCTATCCACGAGGTTACAAAATCAGCTTAG 1275 0.4424 MAIRNVLNRKFLNQSSVTGARFMSSWFRNIEQAPKDPILGVTEAFLADQSPNKINVGVGAYRDDNGKPVVLGCVREAEKRIAGNQFMEYLPMGGSLHMVQESLKLAYGENSEFIKDKRIAAVQALSGTGACRLFAAFQQRFHPNSQIYIPVPTWSNHHNIWRDAGVPIKTFRYYHPESKGLDFSGLLEDIKNAPSGSFFLLHACAHNPTGVDPSEEQWREISSQIKAKGHFPLFDMAYQGFASGNPERDAKAIRIFLDDGHSIGLAQSFAKNMGLYGQRVGCLSLLCEDEKQAVAVKSQLQLISRPMYSNPPLHGALVVSTVLGDPELKKQWLTEVKVMADRIIGMRTALRENLENLGSPLPWNHITNQIGMFCYSGMTPEQVDRLTSEFHIYMTRNGRISMAGINSGNVGYIANAIHEVTKSA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03420 424 Pfam Aminotransferase class I and II 52 417 IPR004839 GO:0009058|GO:0030170
Vivi5g03420 424 Gene3D - 84 325 IPR015421 GO:0003824
Vivi5g03420 424 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 268 281 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vivi5g03420 424 FunFam Aspartate aminotransferase 316 417 - -
Vivi5g03420 424 SUPERFAMILY PLP-dependent transferases 23 422 IPR015424 -
Vivi5g03420 424 PANTHER ASPARTATE AMINOTRANSFERASE 23 421 IPR000796 GO:0006520|GO:0008483
Vivi5g03420 424 Gene3D Aspartate Aminotransferase, domain 1 30 417 IPR015422 GO:0003824
Vivi5g03420 424 FunFam Aspartate aminotransferase 84 325 - -
Vivi5g03420 424 CDD AAT_like 54 404 - -
Vivi5g03420 424 PRINTS Aspartate aminotransferase signature 230 242 IPR000796 GO:0006520|GO:0008483
Vivi5g03420 424 PRINTS Aspartate aminotransferase signature 298 323 IPR000796 GO:0006520|GO:0008483
Vivi5g03420 424 PRINTS Aspartate aminotransferase signature 199 218 IPR000796 GO:0006520|GO:0008483
Vivi5g03420 424 PRINTS Aspartate aminotransferase signature 366 384 IPR000796 GO:0006520|GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03420 Vivi-Chr5 125944965 125949022 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03420 K14455 - gmx:547813 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03420 5 125944965 125949022 Vivi5g03420 5 125944965 125949022 ECH