Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2960 ATGGCGATCCGCAACTCGCTCAACGGTAGATTCCTCCGCCACAGCTCCGTCGCCGGAGCTAGGTTCATGTCGTCGTGGTTCCGGAACATCGAGCCAGCTCCCAAGGACCCGATCCTCGGTGTTACCGAAGCTTTTCTTGCCGATCAGAGTCCAAACAAAGTCAATGTCGGAGTGGGAGCGTATCGCGATGACAATGGAAAACCTGTGGTTCTGGAATGTGTTAGGGAAGCAGAGAGGAGGATTGCAGGAAGCCAATTCATGGAGTATCTTCCTATGGGTGGAAGCATAAAGATGGTTGAAGAATCACTGAAGCTGGGATATGGTGAAAACTCTCAGTTCATCAATGATAAACAAATAGCTGCTGTGCAGGCTTTATCTGGGACTGGTGCATGTCGACTTTTTGCTGCATTTCAACAGCGTTTTCACCCTAACACACAAATTTATATACCAGTGCCCACCTGGGCCAACCACCATAACATTTGGAGAGATGCTGGAGTGCCTTTGAAAACATTCCGTTACTATCACCCTGAGTCTAGAGGACTGGATTTTTCAGGGCTGATGGAAGACATAAAGAATGCTCCTGATGGTTCCTTCTTTCTGCTTCATGCTTGTGCTCACAATCCTACTGGAGTAGATCCTACAGAAGAACAATGGAGAGAGATCTCTTCCCAGATCAAGGCTAAAGGTCATTTCCCTTTATTTGACATGGCATATCAAGGTTTTGCTAGTGGCAATCCAGAGAGAGATGCGAAAGCCATCAGGATTTTTCTTGAAGATGGTCATTTAATAGGACTTGCTCAGTCTTTTGCAAAAAATATGGGATTGTATGGCCAGCGAGTTGGATGCCTTAGCTTACTTTGTGAAAATGAGAAACAAGCTGTTGCTGTAAAAAGTCAGTTGCAGCTGATTTCCAGACCCATGTACAGTAACCCACCTCTTCATGGAGCACTTATAGTTTCAACCATTCTTGGTGATCCAGAGTTAAAGACGTTATGGCTTAAAGAAGTTAAGGTTATGGCAGATCGTATCATTGGAATGAGGACCACACTCCGTGATAACTTAGAAAAGCTGGGTTCTCCTTTGCCATGGCAGCACATAACCAATCAGATTGGAATGTTCTGCTACACTGGGTTGACACCAGAACAGGTTGATCGTTTGACAAACGAGTTTCATATTTACTTGACTCGCAACGGTCGTATCAGTATGGCTGGAATTAATTCGGGGAACGTTGCATATGTGGCTAATGCTATCAACGAGGTCACTAAATCTTCCTAG 1275 0.451 MAIRNSLNGRFLRHSSVAGARFMSSWFRNIEPAPKDPILGVTEAFLADQSPNKVNVGVGAYRDDNGKPVVLECVREAERRIAGSQFMEYLPMGGSIKMVEESLKLGYGENSQFINDKQIAAVQALSGTGACRLFAAFQQRFHPNTQIYIPVPTWANHHNIWRDAGVPLKTFRYYHPESRGLDFSGLMEDIKNAPDGSFFLLHACAHNPTGVDPTEEQWREISSQIKAKGHFPLFDMAYQGFASGNPERDAKAIRIFLEDGHLIGLAQSFAKNMGLYGQRVGCLSLLCENEKQAVAVKSQLQLISRPMYSNPPLHGALIVSTILGDPELKTLWLKEVKVMADRIIGMRTTLRDNLEKLGSPLPWQHITNQIGMFCYTGLTPEQVDRLTNEFHIYLTRNGRISMAGINSGNVAYVANAINEVTKSS* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2960 424 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 268 281 IPR004838 GO:0003824|GO:0009058|GO:0030170
Lja3g2960 424 PANTHER ASPARTATE AMINOTRANSFERASE, MITOCHONDRIAL 1 423 - -
Lja3g2960 424 PANTHER ASPARTATE AMINOTRANSFERASE 1 423 IPR000796 GO:0006520|GO:0008483
Lja3g2960 424 SUPERFAMILY PLP-dependent transferases 23 422 IPR015424 -
Lja3g2960 424 Gene3D Aspartate Aminotransferase, domain 1 30 417 IPR015422 GO:0003824
Lja3g2960 424 Pfam Aminotransferase class I and II 52 417 IPR004839 GO:0009058|GO:0030170
Lja3g2960 424 Gene3D - 84 325 IPR015421 GO:0003824
Lja3g2960 424 PRINTS Aspartate aminotransferase signature 298 323 IPR000796 GO:0006520|GO:0008483
Lja3g2960 424 PRINTS Aspartate aminotransferase signature 230 242 IPR000796 GO:0006520|GO:0008483
Lja3g2960 424 PRINTS Aspartate aminotransferase signature 366 384 IPR000796 GO:0006520|GO:0008483
Lja3g2960 424 PRINTS Aspartate aminotransferase signature 199 218 IPR000796 GO:0006520|GO:0008483
Lja3g2960 424 CDD AAT_like 54 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2960 Lja-Chr3 54068854 54081999 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2960 K14455 - gmx:547813 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2960 3 54068854 54081999 Lja3g2960 3 54068854 54081999 ECH