Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0683 ATGGCTCATTTACTACCTCCCGTTTACACCGAGGCTTTCAAAATCCACAATCCTTTACTGAATCTGAGTTCTCCAACTTCATGTCGCCTTCTCGCCACCAGGACTTCGAGTCATTGCAAGTTTGTGAACGATTCTGCAAAGCAAAGATGTTTTGGTAGGGTTAAGGTTGCCGCTGAGGACTCCACTTCTAGTACTCTCTCTGATTCTATTGCCGATGACTATTACGCTGTTCTTGGCCTGCTTCCAGATGCCACGCCGGAGCAGATTAAGAAGGCTTACTACAATTGCATGAAAGCTTGCCATCCAGACTTGAGTGGCGATGATCCTGAGACGACAAACTTTTGCATATTCATCAATGAAGTATTGACTGTTACAGTGCAGGTACTCAGTGATCCTGTTCAACGCATGGTTTATGATGAAATTCACGGGTATTCGCTGACTTCAATCAATCCTTTCTTGGATGATTCTAGTCCAAAAGATCATGTTTTCGTTGACGAATTCAGCTGCATAGGTTGCAAAAATTGCGCCAGTGTGGCCTCTGATGTGTTTGCAATAGAGGAAGACTATGGAAGAGCCAGAGCATATAGCCAGTGTGGAAGAACTGAATTAGTTCAACAAGCAGTTGAAAGTTGCCCTGTTGACTGCATTCATTGGACAACTGCAGCACAACTATCATTACTTGAAGATGAAATGCGGCGGGTAGAAAGAGTCAATGTTGCCCTGATGCTTGCAGGAATGGGATCATCAATTGATGTTTTTAGAATGGCAAGCTTCAGATGGGAAAAGAGGCAGGCAAAAGTCTTGGAACAAGCAAAAATGAGAATGATGAAGCAGAAAGGTTCTGATAAGACATATTCTTACTGGGACAACCTTTGGGGCAAACCACAAGACTACAAAAATTCAGAGGAGGAAGTGAAAGAGAGAGAAAAGAGAGCTGCAGCAGCAGCACGAAGATGGAGGGAGTACTCAAGGAGGGGCGTCGACAAGCGTCCGACATTCAAACTTCCAGAGGCAACCTCTGGCAACGACAACTGA 1035 0.4464 MAHLLPPVYTEAFKIHNPLLNLSSPTSCRLLATRTSSHCKFVNDSAKQRCFGRVKVAAEDSTSSTLSDSIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCIFINEVLTVTVQVLSDPVQRMVYDEIHGYSLTSINPFLDDSSPKDHVFVDEFSCIGCKNCASVASDVFAIEEDYGRARAYSQCGRTELVQQAVESCPVDCIHWTTAAQLSLLEDEMRRVERVNVALMLAGMGSSIDVFRMASFRWEKRQAKVLEQAKMRMMKQKGSDKTYSYWDNLWGKPQDYKNSEEEVKEREKRAAAAARRWREYSRRGVDKRPTFKLPEATSGNDN 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0683 344 SUPERFAMILY Chaperone J-domain 73 168 IPR036869 -
Lele29g0683 344 Pfam DnaJ domain 73 139 IPR001623 -
Lele29g0683 344 Gene3D DnaJ domain 55 151 IPR036869 -
Lele29g0683 344 PRINTS 3Fe-4S ferredoxin signature 175 185 IPR001080 GO:0005506|GO:0009055
Lele29g0683 344 PRINTS 3Fe-4S ferredoxin signature 164 175 IPR001080 GO:0005506|GO:0009055
Lele29g0683 344 PRINTS 3Fe-4S ferredoxin signature 204 216 IPR001080 GO:0005506|GO:0009055
Lele29g0683 344 SUPERFAMILY 4Fe-4S ferredoxins 161 218 - -
Lele29g0683 344 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 160 188 IPR017896 -
Lele29g0683 344 SMART dnaj_3 72 134 IPR001623 -
Lele29g0683 344 Coils Coil 298 318 - -
Lele29g0683 344 Gene3D - 160 219 - -
Lele29g0683 344 CDD DnaJ 73 131 IPR001623 -
Lele29g0683 344 Pfam 4Fe-4S single cluster domain of Ferredoxin I 164 218 - -
Lele29g0683 344 ProSiteProfiles dnaJ domain profile. 73 142 IPR001623 -
Lele29g0683 344 PANTHER OS01G0730500 PROTEIN 21 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0683 Lele-ChrLele29 4275355 4285086 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0683 29 4275355 4285086 Lele31g0854 31 16105555 16110291 hybridization
Lele29g0683 29 4275355 4285086 Lele32g0662 32 4162559 4167296 hybridization