Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01470 ATGAGCTTGTGCCTTTGCTCCAAACTTAACCAACTCTTTTTTGTCTATGTAACAATACTTCAAGAAACCTACTCTAAATCCAATAGCTTTCATTACAAGATGAGTTCATTTAGAAAAAACTATGTTTTAGTTCTGTTCCTTGTTTTCACTTTGTGGACATGCTATGTAATGTCTCGCAGGTTGCCTGAGGCCAGCTCATCAGAGAGACATGAGAAGTGGATGACACAGTATGGTAAGGTTTACAAGGATGCTTCTGAGAGGGAAAAACGATTCCAAATATTCAAGAACAATGTGCAGTTCATTGAGTCCTTCAATGCTGCTGGGGACAAACCTTTCAACCTCAGCATTAACAAATTTGCTGACCTTCATAATGAAGAATTCAAGGCTTTGATGACTACTGGTCAGAGGAAGGAACGAAGCGTGTGGAAAGAAACAGAAACATCGTTTAGGTATGATAGTGTCACTAAGATTCCTGCTACCGTGGACTGGAGGAAAAGAGGTGCTGTTACTTCAATCAAGGACCAAGGCACATGTGGAAGTTGTTGGGCATTTTCAACTGTGGCTACAATTGAGGGTCTCCATCATATAACTAAAGGTGAATTGGTGTCCTTGTCAGAACAAGAACTAGTAGATTGTGTTAGAGGTGACAGCGACGGATGCAATGGTGGTTATGTGGAAGATGCCTTTGAATTTCTTGCTAAGAAAGGAGGAATAGCAAGTGAAAGAAACTACCCCTATAAAGGAGTTACCAAGAGTTGTAAGGTTAAGAAGGAAAGTCATGGTGTAGCTAAGATCAAAGGGTACGAGAAAGTTCCTGGTAATAGTGAAAAGGCACTCCTAAAAGCTGTGGCACATCAACCAGTGTCAGCTTATGTTGAAGCTGGAGGATCTGCTTTCCAGTTTTATTCAAGTGGGATTTTTACAGGAAAGTGTGGGACTGAAATTGATCATTCTGTTACAGTGGTTGGTTATGGAAAAGCTGGTGATGGTACTAAGTATTGGCTAGTAAAGAATTCATGGGGAACTGAATGGGGTGAGAAAGGGTATATAAGGATGAAGCGAGATATACATGCCAAGAAAGGTTTATGTGGAATTGCTACAAATGCCTCTTATCCAACTGCTTGA 1125 0.4062 MSLCLCSKLNQLFFVYVTILQETYSKSNSFHYKMSSFRKNYVLVLFLVFTLWTCYVMSRRLPEASSSERHEKWMTQYGKVYKDASEREKRFQIFKNNVQFIESFNAAGDKPFNLSINKFADLHNEEFKALMTTGQRKERSVWKETETSFRYDSVTKIPATVDWRKRGAVTSIKDQGTCGSCWAFSTVATIEGLHHITKGELVSLSEQELVDCVRGDSDGCNGGYVEDAFEFLAKKGGIASERNYPYKGVTKSCKVKKESHGVAKIKGYEKVPGNSEKALLKAVAHQPVSAYVEAGGSAFQFYSSGIFTGKCGTEIDHSVTVVGYGKAGDGTKYWLVKNSWGTEWGEKGYIRMKRDIHAKKGLCGIATNASYPTA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01470 374 Pfam Papain family cysteine protease 157 373 IPR000668 GO:0006508|GO:0008234
Phco9g01470 374 CDD Peptidase_C1A 158 372 IPR039417 -
Phco9g01470 374 Gene3D Cysteine proteinases 53 374 - -
Phco9g01470 374 SMART pept_c1 157 373 IPR000668 GO:0006508|GO:0008234
Phco9g01470 374 SMART Inhibitor_I29_2 70 127 IPR013201 -
Phco9g01470 374 Pfam Cathepsin propeptide inhibitor domain (I29) 70 127 IPR013201 -
Phco9g01470 374 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 315 325 IPR025660 -
Phco9g01470 374 SUPERFAMILY Cysteine proteinases 65 373 IPR038765 -
Phco9g01470 374 FunFam Senescence-specific cysteine protease SAG39 51 374 - -
Phco9g01470 374 PRINTS Papain cysteine protease (C1) family signature 333 339 IPR000668 GO:0006508|GO:0008234
Phco9g01470 374 PRINTS Papain cysteine protease (C1) family signature 317 327 IPR000668 GO:0006508|GO:0008234
Phco9g01470 374 PRINTS Papain cysteine protease (C1) family signature 175 190 IPR000668 GO:0006508|GO:0008234
Phco9g01470 374 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 333 352 IPR025661 -
Phco9g01470 374 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 65 367 IPR013128 GO:0008234
Phco9g01470 374 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 175 186 IPR000169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01470 Phco-Chr9 34260876 34262175 Dispersed/Wgd