Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1323 ATGGCGATTCGCAACTCGCTCAACGGACAATTTCTCCGCCGCAGCACCGTCGCTGGAGCTAGGTTTATGTCGTCTTCTTGGTTTCGGAGCATCGAGCCTGCTCCCAAGGATCCGATCCTCGGAGTCACTGAAGCTTTCCTCGCCGATCAGAGTCCAAACAAAGTCAACGTTGGAGTGGGTGCGTATCGCGATGACAATGGAAAGCCTGTGGTTCTGGAATGCGTTAGAGAAGCAGAGAGGAGAATTGCAGGAGGCCAATTCATGGAGTATCTTCCTATTGGTGGAAGCATAAAAATGGTTGAAGAATCGCTCAAGCTGGCATACGGAGAAAACTCCGATTTCATCAAGGATAAAAGAATAGCTGCTGTGCAGGCTTTATCTGGAACTGGTGCATGTCGACTTTTTGCTGCATTTCAACAGAGATTTCATCCTAATTCCCGAATCTATATACCAGTGCCTACCTGGGTTAACCATCATAACATTTGGAGAGATGCTGGAGTGCCTATGAAGACATTCCGTTACTATCATCCCGAGTCTAAAGGACTGGATTTTGCAGGACTGATGGATGACATGAAGAATGCTCCAGATGGTTCCTTCTTTCTGCTTCATGCTTGTGCGCACAATCCTACTGGAGTAGATCCTTCAGAAGAACAATGGAGAGAGATCTCTTCCATGATTAAGGCTAAGGGTCATTTCCCTTTCTTGGACATGGCATATCAAGGTTTTGCTAGTGGTGATCCAGAGAGAGATGTAAAAGCCATTAGGATTTTTCTGGAGGACGGTCATTTAATAGGACTTGCTCAGTCATATGCAAAAAATATGGGACTGTACGGCCAGCGAGTTGGATGCCTGAGTGTGCTCTGTGAAGATGAGAAACAAGCTGTGATTGTGAAAAGTCAGTTACAGCTGATTGCTAGACCCATGTACAGTAACCCACCTCTCCATGGAGCGCTTATAGTTTCAACTGTCCTTGGAGATCCTGAGTTGAAGAAGTTATGGCTTAACGAAGTCAAGGTTATGGCAGATCGCATCATTGGAATGAGGACCACACTACGAGAGAACTTGGAAAAGAGGAATTCTCCTTTGCCCTGGCAGCACATAACCAATCAGATTGGTATGTTCTGCTACAGTGGATTGACACCTGAACAGGTTGATGTTATGACAAACAAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGTATGGCTGGTCTTAATACGGGCAATGTCGGATATGTTGCTGACGCTATCCATGAGGTTACAAAATCTTCCTAA 1278 0.4546 MAIRNSLNGQFLRRSTVAGARFMSSSWFRSIEPAPKDPILGVTEAFLADQSPNKVNVGVGAYRDDNGKPVVLECVREAERRIAGGQFMEYLPIGGSIKMVEESLKLAYGENSDFIKDKRIAAVQALSGTGACRLFAAFQQRFHPNSRIYIPVPTWVNHHNIWRDAGVPMKTFRYYHPESKGLDFAGLMDDMKNAPDGSFFLLHACAHNPTGVDPSEEQWREISSMIKAKGHFPFLDMAYQGFASGDPERDVKAIRIFLEDGHLIGLAQSYAKNMGLYGQRVGCLSVLCEDEKQAVIVKSQLQLIARPMYSNPPLHGALIVSTVLGDPELKKLWLNEVKVMADRIIGMRTTLRENLEKRNSPLPWQHITNQIGMFCYSGLTPEQVDVMTNKFHIYMTRNGRISMAGLNTGNVGYVADAIHEVTKSS* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1323 425 Pfam Aminotransferase class I and II 53 418 IPR004839 GO:0009058|GO:0030170
Pvu11g1323 425 Gene3D Aspartate Aminotransferase, domain 1 31 418 IPR015422 GO:0003824
Pvu11g1323 425 CDD AAT_like 55 420 - -
Pvu11g1323 425 PANTHER ASPARTATE AMINOTRANSFERASE, MITOCHONDRIAL 1 424 - -
Pvu11g1323 425 PANTHER ASPARTATE AMINOTRANSFERASE 1 424 IPR000796 GO:0006520|GO:0008483
Pvu11g1323 425 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 269 282 IPR004838 GO:0003824|GO:0009058|GO:0030170
Pvu11g1323 425 SUPERFAMILY PLP-dependent transferases 25 423 IPR015424 -
Pvu11g1323 425 PRINTS Aspartate aminotransferase signature 200 219 IPR000796 GO:0006520|GO:0008483
Pvu11g1323 425 PRINTS Aspartate aminotransferase signature 231 243 IPR000796 GO:0006520|GO:0008483
Pvu11g1323 425 PRINTS Aspartate aminotransferase signature 299 324 IPR000796 GO:0006520|GO:0008483
Pvu11g1323 425 PRINTS Aspartate aminotransferase signature 367 385 IPR000796 GO:0006520|GO:0008483
Pvu11g1323 425 Gene3D - 85 326 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1323 Pvu-Chr11 28270680 28280519 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1323 K14455 - gmx:547813 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1323 11 28270680 28280519 Pvu11g1323 11 28270680 28280519 ECH