Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01208 ATGGCTGTTTCGCTCAAAGGAGAACTTCTCCGCCGCAGCTCTGTTGCTGGGACAAGGTTCACGTCATCTTCATGGTTTCGGAGTATCGAGCCCGCTCCCAAGGATCCGATCCTCGGAGTAACCGAAGCTTTCCTCGCCGATCAGAGTCCAAACAAAGTCAACGTCGGAGTGGGTGCGTATCGCGACGACAACGGAAAGGCTGTGGTTTTGGAGTGCGTTAGAGAAGCAGAGAGGAGAATTGCAGGAAACCAATTCATGGAGTATCTTCCTATTGGTGGAAGCATAAAAATGGTTGAAGAATCGCTCAAGCTGGCATACGGAGACAACTCTGAGTTCATCAAGGATAAAAGAATAGCTGCAGTGCAGGCTTTATCTGGGACTGGTGCATGTAGACTTTTTGCTGCATTTCAACAGAGATTTCATCCTAATTCCCAAATCTACATACCAGTGCCTACCTGGGCCAACCACCATAACATTTGGAGAGATGCTGGAGTGTCTATGAAGACATTCCGTTATTATCATCCAGAGTCTAAAGGATTGGATTTTGAAGGACTGATGAACGACATGAAGGCTAAGGGTCATTTCCCTTTCTTTGACATGGCATATCAAGGTTTTGCTAGTGGTGATCCAGAGAGAGATGCAAAAGCCATCAGGATTTTTCTGGAGGACGGTCATTTAATTGGACTAGCTCAGTCATATGCAAAAAATATGGGACTGTACGGCCAGCGAGTTGGATGTCTGAGGTTAGTAGACTGCTTTAAACTACAACTCAGGTGCAGAATGCTACATGAATAA 795 0.4591 MAVSLKGELLRRSSVAGTRFTSSSWFRSIEPAPKDPILGVTEAFLADQSPNKVNVGVGAYRDDNGKAVVLECVREAERRIAGNQFMEYLPIGGSIKMVEESLKLAYGDNSEFIKDKRIAAVQALSGTGACRLFAAFQQRFHPNSQIYIPVPTWANHHNIWRDAGVSMKTFRYYHPESKGLDFEGLMNDMKAKGHFPFFDMAYQGFASGDPERDAKAIRIFLEDGHLIGLAQSYAKNMGLYGQRVGCLRLVDCFKLQLRCRMLHE 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01208 264 Pfam Aminotransferase class I and II 51 190 IPR004839 GO:0009058|GO:0030170
Vimu5g01208 264 SUPERFAMILY PLP-dependent transferases 24 253 IPR015424 -
Vimu5g01208 264 Gene3D - 192 258 IPR015421 GO:0003824
Vimu5g01208 264 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 232 245 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vimu5g01208 264 Gene3D Aspartate Aminotransferase, domain 1 18 87 IPR015422 GO:0003824
Vimu5g01208 264 Gene3D - 88 191 IPR015421 GO:0003824
Vimu5g01208 264 PANTHER ASPARTATE AMINOTRANSFERASE 21 191 IPR000796 GO:0006520|GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01208 Vimu-Chr5 21209695 21215409 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01208 K14455 - gmx:547813 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01208 5 21209695 21215409 Vimu5g01208 5 21209695 21215409 ECH