Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0972 ATGGCGATTCGCAACTCGCTCACCGCTAGAATCCTCCGTCGCAGCTCCGTTGCCGGAGAAAGACTCTTGTCCTCCTCGTCGTGGTTTCGGAGCATTGAGCCCGCTCCCAAGGACCCGATCCTCGGAGTGACCGAAGCGTTTCTCGCCGATAAGAGTCCGAACAAAGTCAACGTCGGAGTGGGTGCGTATCGTGATGATGACGGAAAACCTGTGGTTTTGAACAGTGTTAGAGAAGCAGAGAGGAGGATTGCCGGAAGTCAATTCATGGAGTATCTTCCCATGGGTGGAAGCATAAAAATGATAGACGAATCGCTGAAGCTGGCATATGGAGACAACTCTGAGTTCATCAAGGATAAGAGAATAGCTGCAGTGCAGGCTTTATCTGGGACTGGTGCATGTCGACTTTTTGCTGCATTTCAGCAGAGATTTCATCCTAATACTCAAGTCTATATACCAGTGCCTACCTGGGCTAACCACCATAACATTTGGAGAGATGCTGGAGTGCCTATTAAGACATTCCGTTACTATCACCCTGAGTCTAGAGGATTGGATTTTGAAGGACTGGTGGATGACATAAAGAATGCACCAGATGGTTCTTTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGAGTAGATCCTTCAGAAGAACAGTGGAGAGAGATCTCTTCCCAGATAAAGGCTAAGGGTCATTTCCCTCTCTTTGACATGGCATATCAAGGTTTTGCTAGTGGTGATCCAGAGAAAGATGCAAAAGCCATTAATATTTTTCTCGAGGATGGTCATTTAATAGGACTTGCTCAGTCATATGCAAAAAATATGGGACTGTATGGCCAACGAGCAGGATGCCTGAGTGTGCTTTGCGAAGATGAGAAACAAGCTGTGGCTGTAAAAAGTCAGTTGCAGCTGATTGCTAGACCCATGTACAGTAACCCACCTCTCCATGGAGCGCTTATAGTTTCCACTGTCCTTGGTGATCCAGATTTGAAGAAGTTATGGCTTAAAGAAGTCAAGGTTATGGCAGACCGCATCATCGGAATGAGGACTACACTGCGAGAAAACTTAGAAAAGAGGGGGTCTACTTTGCCATGGCAGCATATAACCAATCAGATTGGTATGTTCTGCTACAGTGGGTTGACTCCAGAACAGGTTGATCGCATGACAAACGAGTTCCATATTTACATGACCCGTAACGGTCGTATCAGTATGGCTGGTCTTAATACGGGCAACGTTGGATATATTGCTGACGCTATCCATGAGGTTACAAAATCATCCTAG 1281 0.4614 MAIRNSLTARILRRSSVAGERLLSSSSWFRSIEPAPKDPILGVTEAFLADKSPNKVNVGVGAYRDDDGKPVVLNSVREAERRIAGSQFMEYLPMGGSIKMIDESLKLAYGDNSEFIKDKRIAAVQALSGTGACRLFAAFQQRFHPNTQVYIPVPTWANHHNIWRDAGVPIKTFRYYHPESRGLDFEGLVDDIKNAPDGSFFLLHACAHNPTGVDPSEEQWREISSQIKAKGHFPLFDMAYQGFASGDPEKDAKAINIFLEDGHLIGLAQSYAKNMGLYGQRAGCLSVLCEDEKQAVAVKSQLQLIARPMYSNPPLHGALIVSTVLGDPDLKKLWLKEVKVMADRIIGMRTTLRENLEKRGSTLPWQHITNQIGMFCYSGLTPEQVDRMTNEFHIYMTRNGRISMAGLNTGNVGYIADAIHEVTKSS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0972 426 Gene3D Aspartate Aminotransferase, domain 1 32 419 IPR015422 GO:0003824
Aed5g0972 426 CDD AAT_like 56 407 - -
Aed5g0972 426 Gene3D - 86 327 IPR015421 GO:0003824
Aed5g0972 426 Pfam Aminotransferase class I and II 54 419 IPR004839 GO:0009058|GO:0030170
Aed5g0972 426 SUPERFAMILY PLP-dependent transferases 27 424 IPR015424 -
Aed5g0972 426 PANTHER ASPARTATE AMINOTRANSFERASE 1 425 IPR000796 GO:0006520|GO:0008483
Aed5g0972 426 PANTHER ASPARTATE AMINOTRANSFERASE, MITOCHONDRIAL 1 425 - -
Aed5g0972 426 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 270 283 IPR004838 GO:0003824|GO:0009058|GO:0030170
Aed5g0972 426 PRINTS Aspartate aminotransferase signature 300 325 IPR000796 GO:0006520|GO:0008483
Aed5g0972 426 PRINTS Aspartate aminotransferase signature 368 386 IPR000796 GO:0006520|GO:0008483
Aed5g0972 426 PRINTS Aspartate aminotransferase signature 201 220 IPR000796 GO:0006520|GO:0008483
Aed5g0972 426 PRINTS Aspartate aminotransferase signature 232 244 IPR000796 GO:0006520|GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0972 Aed-Chr5 7538237 7543554 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0972 K14455 - gmx:547813 822.772