Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0715 ATGGCTCATTTACTATCTCCTGTTTACACTGAGGCTCTCAAAATCCACAATCCTTTACTGAATCTGAGTTCTCCAACTTCATGTCGCCTTCTCGCCACCAGGACTTCGAGTCATTGCAAGTTTGGGAATGATTCTGCAAAGCGAAGATGTTTTGGTAGGGTTAAGGTTGCCGCTGAGGACTCTACATCTAGTACTCTCTCTGATTCTATTGCCGATGACTATTACAATGTTCTTGGCCTGCTTCCAGATGCCACGCCGGAGCAGATTAAGAAGGCTTACTACAATTGTATGAAAGCTTGCCATCCAGACTTGAGTGGCGATGATCCTGAAACGACAAACTTTTGCATGTTCATCAATGAAGTGTATGAGGTACTCAGTGATCCTGTTCAACGCATGGTTTATGATGAAATTCACGGGTATTCTCTGACTTCAATCAATCCTTTCTTTGACGATTCGAGTCCAAAAGATCATGTTTTCGTTGACGAATTCAGCTGCATAGGTTGCAAAAATTGCGCCAATGTGGCCTCTGATGTGTTTGCAATAGAGGAAGACTATGGAAGAGCCAGAGCATATAGCCAGTGTGGAAGAACTGAATTAGTTCAACAAGCAATTGAAAGTTGCCCTGTTGACTGCATTCATTGGACATCTGCGGCACAACTATCATTACTCGAAGATGAAATGCGGCGGGTAGAAAGAGTCAATGTTGCCCTGATGCTTGCAGGAATGGGATCATCACTTGATGTTTTTAGACTGGCAAGCTCCAGATGGGAAAAGAGGCAGGCAAAAGTCTTGGAACAAGCAAAAATGAGAATGATGAAGCAGAAAGGTTCTGATGAGACAAATTCCTACTGGGACGACCTTTGGGGCAGACCAAAAGACTCCAAAAATTCAGAGGAGGAAGTGAAAGAGAGAGAAAAGAGAGCTGCAGCAGCAGCACGAAGATGGAGGGAGTACTCAAGGAGGGGTGTCGACAAGCGTCCGACATTCAAACTCCCAGAGGCAGGCTCTGGCAAAGACAACTGA 1023 0.4487 MAHLLSPVYTEALKIHNPLLNLSSPTSCRLLATRTSSHCKFGNDSAKRRCFGRVKVAAEDSTSSTLSDSIADDYYNVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYEVLSDPVQRMVYDEIHGYSLTSINPFFDDSSPKDHVFVDEFSCIGCKNCANVASDVFAIEEDYGRARAYSQCGRTELVQQAIESCPVDCIHWTSAAQLSLLEDEMRRVERVNVALMLAGMGSSLDVFRLASSRWEKRQAKVLEQAKMRMMKQKGSDETNSYWDDLWGRPKDSKNSEEEVKEREKRAAAAARRWREYSRRGVDKRPTFKLPEAGSGKDN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0715 340 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 156 184 IPR017896 -
Lele30g0715 340 MobiDBLite consensus disorder prediction 271 306 - -
Lele30g0715 340 Gene3D - 156 216 - -
Lele30g0715 340 PRINTS 3Fe-4S ferredoxin signature 200 212 IPR001080 GO:0005506|GO:0009055
Lele30g0715 340 PRINTS 3Fe-4S ferredoxin signature 171 181 IPR001080 GO:0005506|GO:0009055
Lele30g0715 340 PRINTS 3Fe-4S ferredoxin signature 160 171 IPR001080 GO:0005506|GO:0009055
Lele30g0715 340 Pfam DnaJ domain 73 135 IPR001623 -
Lele30g0715 340 CDD DnaJ 73 127 IPR001623 -
Lele30g0715 340 Gene3D DnaJ domain 55 147 IPR036869 -
Lele30g0715 340 PANTHER OS01G0730500 PROTEIN 1 321 - -
Lele30g0715 340 SUPERFAMILY Chaperone J-domain 73 167 IPR036869 -
Lele30g0715 340 Coils Coil 294 314 - -
Lele30g0715 340 SUPERFAMILY 4Fe-4S ferredoxins 157 214 - -
Lele30g0715 340 PRINTS DnaJ domain signature 75 93 IPR001623 -
Lele30g0715 340 PRINTS DnaJ domain signature 110 130 IPR001623 -
Lele30g0715 340 PRINTS DnaJ domain signature 93 108 IPR001623 -
Lele30g0715 340 ProSiteProfiles dnaJ domain profile. 73 138 IPR001623 -
Lele30g0715 340 Pfam 4Fe-4S single cluster domain of Ferredoxin I 160 214 - -
Lele30g0715 340 MobiDBLite consensus disorder prediction 285 306 - -
Lele30g0715 340 SMART dnaj_3 72 130 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0715 Lele-ChrLele30 11693847 11698562 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0715 30 11693847 11698562 Lele31g0854 31 16105555 16110291 hybridization
Lele30g0715 30 11693847 11698562 Lele32g0662 32 4162559 4167296 hybridization