Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0982 ATGGTTCCCAAAAATCAACTCCATCACATTTCATTGGCTCTGTTTCTTTGCTTGGGATTCTACGCTTTTCAAGTCACATCTCGCACTCTTCAAGATGCTTCCATGTATGAAAAGCATGAACAATGGATGACCCGCTATGCCAAAGTGTATAAGGATCCCCAAGAAAGGGAAAAGCGTTTCAAGATATTTAAGGAAAATGTGAATTACATTGAGGCTTTCAATGATGCTGCCAATAAACCCTACAAGCTAGGCATTAATCAATTTGCAGACCTTAGTAACGATGAGTTCATAGCAACCAGAAATAGATTCAAGGGGCACATGTGCTCCTCAATCACAAGAACAGCCACTTTTAAATATGAAAATGTGAGTGCAGTACCAACCTCAATAGATTGGAGACAAAAAGGTGCAGTAACACCCATCAAGGACCAAGGCCAATGTGGATGTTGTTGGGCTTTTTCTGCTGTTGCTGCAACTGAAGGAATCCATAAGCTGAGTACTGGAAAATTGATCTCTTTATCCGAACAAGAACTCGTTGATTGCGACACAAAGGGTGTGGACCAAGGTTGTGAGGGTGGTCTTATGGATGATGCTTTTAAATTCATAATTCAAAATCATGGACTCAACCTTGAAGCCAGTTACCCCTATAAGGGTGTTGATGGAAAATGCAATGCAAAAGAAGCAGCCAACAATGCTGCTACAATTACTGGGTACGAGGATGTCCCCGCCAACAATGAGAAGGCACTGCAAAAAGCAGTTGCTAATCAACCAGTTTCTGTCGCCATTGATGCTAGTGGTTCTGACTTTCAATTTTACAAAAGTGGCGTTTTCACTGGTTCTTGTGGAACTGATTTGGATCATGGCGTCACTGCAGTGGGTTATGGTGTTAGTGATGGAACTGAGTATTGGTTGGTTAAGAACTCATGGGGAACTACGTGGGGTGAAGAAGGGTACATTAGGATGCAAAAGGATGTTAGTGCTGCAGAAGGACTGTGTGGCATTGCAATGCAAGCTTCTTACCCAACTGCATGA 1029 0.4247 MVPKNQLHHISLALFLCLGFYAFQVTSRTLQDASMYEKHEQWMTRYAKVYKDPQEREKRFKIFKENVNYIEAFNDAANKPYKLGINQFADLSNDEFIATRNRFKGHMCSSITRTATFKYENVSAVPTSIDWRQKGAVTPIKDQGQCGCCWAFSAVAATEGIHKLSTGKLISLSEQELVDCDTKGVDQGCEGGLMDDAFKFIIQNHGLNLEASYPYKGVDGKCNAKEAANNAATITGYEDVPANNEKALQKAVANQPVSVAIDASGSDFQFYKSGVFTGSCGTDLDHGVTAVGYGVSDGTEYWLVKNSWGTTWGEEGYIRMQKDVSAAEGLCGIAMQASYPTA* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0982 342 Pfam Papain family cysteine protease 125 341 IPR000668 GO:0006508|GO:0008234
Apr3g0982 342 PANTHER - 23 341 - -
Apr3g0982 342 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 23 341 - -
Apr3g0982 342 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 143 154 IPR000169 -
Apr3g0982 342 SUPERFAMILY Cysteine proteinases 31 341 IPR038765 -
Apr3g0982 342 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 301 320 IPR025661 -
Apr3g0982 342 PRINTS Papain cysteine protease (C1) family signature 143 158 IPR000668 GO:0006508|GO:0008234
Apr3g0982 342 PRINTS Papain cysteine protease (C1) family signature 286 296 IPR000668 GO:0006508|GO:0008234
Apr3g0982 342 PRINTS Papain cysteine protease (C1) family signature 301 307 IPR000668 GO:0006508|GO:0008234
Apr3g0982 342 SMART pept_c1 125 341 IPR000668 GO:0006508|GO:0008234
Apr3g0982 342 CDD Peptidase_C1A 126 340 IPR039417 -
Apr3g0982 342 SMART Inhibitor_I29_2 39 96 IPR013201 -
Apr3g0982 342 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 284 294 IPR025660 -
Apr3g0982 342 Pfam Cathepsin propeptide inhibitor domain (I29) 39 96 IPR013201 -
Apr3g0982 342 Gene3D Cysteine proteinases 23 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0982 Apr-Chr3 24701190 24702305 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0982 - K16292 gmx:102666929 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0982 3 24701190 24702305 Apr3g0982 3 24701190 24702305 ECH