Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01210 ATGGCGAGTGCAACAGCGCATGTTTTTTCAGGCCTCACTGTTTCTGGTGGCAAAGGAAATTCAATCTTCAATTTCAATCACTCTCCTTTTTCTTCCACTCTTCTTCCATCAAATTTCAGGCCCTTCAACTCTTTCTCATCCAATGGTCTTTTCTCCAGAGATTACTTGTCAAAGGACATGCTTTGCCGCCCAACACGTTCTCCTGTTATTTGTATGGCCGGAAAAGGTTCCAGTAAGAAAAAGTCTAAGGTTATTAGGCTTGTCTCAACTGCTGGAACTGGATTCTTTTATGCCATAAAGAAAAGCAAGAAGAATGAAAAGCTTGAGCTGAAGAAGTATGATCCAAAGGTGAAGCGCCATGTTGTGTTCAAAGAATCTAAATAA 384 0.4062 MASATAHVFSGLTVSGGKGNSIFNFNHSPFSSTLLPSNFRPFNSFSSNGLFSRDYLSKDMLCRPTRSPVICMAGKGSSKKKSKVIRLVSTAGTGFFYAIKKSKKNEKLELKKYDPKVKRHVVFKESK 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01210 127 PANTHER 54S RIBOSOMAL PROTEIN L39, MITOCHONDRIAL 60 127 - -
Vimu5g01210 127 NCBIfam 50S ribosomal protein L33 79 127 IPR001705 GO:0003735|GO:0005840|GO:0006412
Vimu5g01210 127 Hamap 50S ribosomal protein L33 [rpmG]. 78 127 IPR001705 GO:0003735|GO:0005840|GO:0006412
Vimu5g01210 127 SUPERFAMILY Zn-binding ribosomal proteins 79 127 IPR011332 GO:0006412
Vimu5g01210 127 Pfam Ribosomal protein L33 84 127 IPR001705 GO:0003735|GO:0005840|GO:0006412
Vimu5g01210 127 Gene3D Ribosomal protein L33 71 127 IPR038584 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01210 Vimu-Chr5 21242031 21243258 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01210 K02913 - adu:107462582 81.2629