Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0239 . . Adu09g00704 Aed2g1546 Aev09g0323 Ahy19g0914 Ahy9g0672 Aip09g01002 . . . . Arst9g00935 . . . Car07g03225 Cca01g02441 . . . . . Gma16g00798 Gso16g0714 . . . . . . . Lapu10g01000 Lasa4g00289 . . . . Lja3g4403 . Mepo1g04453 Mesa29g05132 . Mtr8g0321 Phac10g00199 . . Psa4g4708 Pste6g00806 Pumo7g02248 Rops4g00164 Seca4g10449 . Ssu2g0591 . . Trre15g00346 Tsu08g00298 Vian9g01278 . Vimu9g01382 . Vivi7g03886 Vra9g1103
Pvu10g0240 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu9g01384 . . .
Pvu10g0241 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst4g01535 . . . . . . . Vimu9g01388 . . Vra9g1104
Pvu10g0242 . . . Aed2g1548 . . . . . . . . . . . . . . . . . . Gma03g00778 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst4g01536 . . . . . . . . . . Vra9g1105
Pvu10g0243 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0245 . . . . . . . Aip02g02201 . . . . . . . . . . . Dod07g1227 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0246 . . Adu09g00687 Aed2g1550 Aev09g0327 Ahy19g0896 Ahy9g0658 Aip09g00986 Alju05g0502 Amo19g0862 . Apr10g0346 Arst9g00916 . . . Car07g03226 Cca01g02444 . . Enph10g0996 . Gma03g00783 Gma16g00793 Gso16g0713 Gso3g0756 . . . . . . . Lasa4g00291 . . . . Lja3g4400 Mal5g0304 Mepo1g04458 Mesa29g05139 . Mtr8g0317 . . Prci12g0549 Psa4g4711 Pste6g00826 Pumo7g02237 Rops4g00205 . . Ssu2g0596 Sto1g2505 . . Tsu08g00292 . . Vimu9g01398 . . .
Pvu10g0247 Acco07g1671 Accr6g01412 Adu09g00685 Aed2g1551 Aev09g0329 Ahy19g0894 Ahy9g0656 Aip09g00984 Alju05g0504 Amo19g0860 . Apr10g0006 Arst9g00914 Bach6g01255 Bisa06g0670 Bva02g01141 Car07g03228 Cca01g02446 Dere11g0519 . Enph10g0998 Glsi07g1632 Gma03g00785 Gma16g00789 Gso16g0711 Gso3g0757 Lal14g0197 . . Lan12g0039 . . Lapu10g00996 Lasa4g00292 Lele37g1099 Lele38g0978 Lele39g0315 Lele40g0919 Lja3g4397 . Mepo1g04459 Mesa29g05140 Mibi04g1669 Mtr8g0316 . . Prci12g0550 Psa4g4712 Pste6g00834 Pumo7g02236 Rops4g00212 Seca4g10425 Spst4g01540 Ssu2g0597 Sto1g2506 . Trre15g00338 Tsu08g00291 Vian9g01289 Vifa4g01511 Vimu9g01400 Viun10g00606 Vivi7g03894 .
Pvu10g0248 . . Adu09g00683 . . Ahy19g0892 Ahy9g0654 Aip09g00982 . Amo19g0858 . Apr10g0343 Arst9g00912 . . . Car07g03231 . . . . . . . . . . . . . . . Lapu10g00995 Lasa4g00295 . . . . Lja3g4394 . Mepo1g04461 Mesa29g05144 . Mtr8g0314 . . . . Pste6g00840 . . . . . . . . Tsu08g00289 . . Vimu9g01401 . . .
   
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Select Species Gene Chromosome Start End Strand
Gso Gso16g0713 Chr16 11307866 11319179 +
Pvu Pvu10g0239 Chr10 3408925 3416866 -
Adu Adu09g00704 Chr09 9790018 9798204 +
Aed Aed2g1546 Chr2 19130738 19137507 -
Aev Aev09g0323 Chr09 2659795 2668582 -
Ahy Ahy19g0914 Chr19 14171884 14179786 +
Ahy Ahy9g0672 Chr9 10242193 10250383 +
Aip Aip09g01002 Chr09 14126355 14134551 +
Arst Arst9g00935 Chr9 9825067 9833049 +
Car Car07g03225 Chr07 59849896 59869137 -
Cca Cca01g02441 Chr01 53543266 53550280 -
Gma Gma16g00798 Chr16 11525018 11533060 +
Gso Gso16g0714 Chr16 11386227 11394159 +
Lapu Lapu10g01000 Chr10 11740396 11750488 +
Lasa Lasa4g00289 Chr4 10186622 10189409 -
Lja Lja3g4403 Chr3 85313952 85319759 +
Mepo Mepo1g04453 Chr1 52252703 52259002 -
Mesa Mesa29g05132 Chr29 84485987 84492136 -
Mtr Mtr8g0321 Chr8 3544044 3549810 +
Phac Phac10g00199 Chr10 3419264 3427944 +
Psa Psa4g4708 Chr4 416350336 416354505 -
Pste Pste6g00806 Chr6 3094319 3102181 -
Pumo Pumo7g02248 Chr7 64004471 64012962 +
Rops Rops4g00164 Chr4 5215422 5230330 -
Seca Seca4g10449 Chr4 240163880 240172028 +
Ssu Ssu2g0591 Chr2 34224706 34235011 -
Trre Trre15g00346 Chr15 2386438 2391755 +
Tsu Tsu08g00298 Chr08 2851624 2857225 +
Vian Vian9g01278 Chr9 27201296 27208591 -
Vimu Vimu9g01382 Chr9 22259592 22266202 -
Vivi Vivi7g03886 Chr7 104919367 104923753 -
Vra Vra9g1103 Chr9 14204366 14211533 -
Pvu Pvu10g0240 Chr10 3420451 3421056 +
Vimu Vimu9g01384 Chr9 22287197 22297003 +
Pvu Pvu10g0241 Chr10 3421381 3428606 +
Spst Spst4g01535 Chr4 54347123 54348445 +
Vimu Vimu9g01388 Chr9 22323024 22330341 +
Vra Vra9g1104 Chr9 14222448 14231925 +
Pvu Pvu10g0242 Chr10 3431788 3444404 +
Aed Aed2g1548 Chr2 19167879 19174136 +
Gma Gma03g00778 Chr03 28379240 28379842 +
Spst Spst4g01536 Chr4 54348546 54351844 +
Vra Vra9g1105 Chr9 14236339 14242040 +
Pvu Pvu10g0243 Chr10 3447422 3448670 +
Pvu Pvu10g0244 Chr10 3448869 3449378 +
Pvu Pvu10g0245 Chr10 3455027 3458764 +
Aip Aip02g02201 Chr02 92863464 92866054 +
Dod Dod07g1227 Chr07 32146316 32151261 +
Pvu Pvu10g0246 Chr10 3464257 3474912 -
Adu Adu09g00687 Chr09 9537914 9545203 +
Aed Aed2g1550 Chr2 19182069 19191304 -
Aev Aev09g0327 Chr09 2711541 2718969 -
Ahy Ahy19g0896 Chr19 13799002 13808087 +
Ahy Ahy9g0658 Chr9 9993062 10002130 +
Aip Aip09g00986 Chr09 13795333 13803726 +
Alju Alju05g0502 Chr05 8654951 8662613 +
Amo Amo19g0862 Chr19 14036652 14046112 +
Apr Apr10g0346 Chr10 8320221 8331806 +
Arst Arst9g00916 Chr9 9571544 9580398 +
Car Car07g03226 Chr07 59871561 59878725 -
Cca Cca01g02444 Chr01 53603680 53614109 -
Enph Enph10g0996 Chr10 12562015 12571769 +
Gma Gma03g00783 Chr03 28454402 28462999 -
Gma Gma16g00793 Chr16 11444758 11455957 +
Gso Gso16g0713 Chr16 11307866 11319179 +
Gso Gso3g0756 Chr3 27022384 27033019 -
Lasa Lasa4g00291 Chr4 10229470 10237841 -
Lja Lja3g4400 Chr3 85272077 85279838 +
Mal Mal5g0304 Chr5 4984027 4986356 -
Mepo Mepo1g04458 Chr1 52335199 52344608 -
Mesa Mesa29g05139 Chr29 84654414 84662646 -
Mtr Mtr8g0317 Chr8 3470314 3479114 +
Prci Prci12g0549 Chr12 4760437 4771076 +
Psa Psa4g4711 Chr4 416442163 416452269 -
Pste Pste6g00826 Chr6 3190441 3197591 -
Pumo Pumo7g02237 Chr7 63407394 63415559 +
Rops Rops4g00205 Chr4 6757356 6771515 -
Ssu Ssu2g0596 Chr2 34552631 34563698 -
Sto Sto1g2505 Chr1 32503058 32510202 +
Tsu Tsu08g00292 Chr08 2800615 2809402 +
Vimu Vimu9g01398 Chr9 22482444 22488297 -
Pvu Pvu10g0247 Chr10 3489394 3493486 -
Acco Acco07g1671 Chr07 32853279 32856296 +
Accr Accr6g01412 Chr6 44135465 44138491 +
Adu Adu09g00685 Chr09 9507233 9510786 -
Aed Aed2g1551 Chr2 19196827 19201654 -
Aev Aev09g0329 Chr09 2728327 2732197 -
Ahy Ahy19g0894 Chr19 13758548 13762083 -
Ahy Ahy9g0656 Chr9 9966567 9970131 -
Aip Aip09g00984 Chr09 13747953 13759441 -
Alju Alju05g0504 Chr05 8673028 8676058 -
Amo Amo19g0860 Chr19 13996091 13999590 -
Apr Apr10g0006 Chr10 74343 78530 -
Arst Arst9g00914 Chr9 9542126 9545692 -
Bach Bach6g01255 Chr6 11833815 11836972 +
Bisa Bisa06g0670 Chr06 20168545 20168997 -
Bva Bva02g01141 Chr02 15580469 15583309 -
Car Car07g03228 Chr07 59883678 59885942 -
Cca Cca01g02446 Chr01 53637293 53641234 -
Dere Dere11g0519 Chr11 8703981 8707029 -
Enph Enph10g0998 Chr10 12580095 12583871 -
Glsi Glsi07g1632 Chr07 53382508 53382960 +
Gma Gma03g00785 Chr03 28476808 28481569 -
Gma Gma16g00789 Chr16 11357660 11361035 +
Gso Gso16g0711 Chr16 11210292 11213642 +
Gso Gso3g0757 Chr3 27044212 27048998 -
Lal Lal14g0197 Chr14 2241038 2244111 +
Lan Lan12g0039 Chr12 341146 343851 -
Lapu Lapu10g00996 Chr10 11674545 11679267 +
Lasa Lasa4g00292 Chr4 10266723 10268315 -
Lele Lele37g1099 Chr37 20676730 20679479 +
Lele Lele38g0978 Chr38 21359562 21362474 +
Lele Lele39g0315 Chr39 2186010 2188882 -
Lele Lele40g0919 Chr40 19753307 19756196 +
Lja Lja3g4397 Chr3 85248549 85251992 +
Mepo Mepo1g04459 Chr1 52357882 52360595 -
Mesa Mesa29g05140 Chr29 84675665 84678105 -
Mibi Mibi04g1669 Chr04 44892125 44895347 +
Mtr Mtr8g0316 Chr8 3457128 3459725 +
Prci Prci12g0550 Chr12 4779873 4783299 -
Psa Psa4g4712 Chr4 416475319 416479839 -
Pste Pste6g00834 Chr6 3222485 3224521 -
Pumo Pumo7g02236 Chr7 63367123 63372001 +
Rops Rops4g00212 Chr4 6948549 6952526 -
Seca Seca4g10425 Chr4 239881826 239885658 +
Spst Spst4g01540 Chr4 54396182 54399252 -
Ssu Ssu2g0597 Chr2 34592508 34596754 -
Sto Sto1g2506 Chr1 32511646 32514517 -
Trre Trre15g00338 Chr15 2330500 2333315 +
Tsu Tsu08g00291 Chr08 2793310 2796119 +
Vian Vian9g01289 Chr9 27608562 27612754 -
Vifa Vifa4g01511 Chr4 446666969 446668773 -
Vimu Vimu9g01400 Chr9 22501389 22501796 -
Viun Viun10g00606 Chr10 5693313 5697828 +
Vivi Vivi7g03894 Chr7 104978330 104980620 -
Pvu Pvu10g0248 Chr10 3500201 3501903 -
Adu Adu09g00683 Chr09 9488706 9490720 +
Ahy Ahy19g0892 Chr19 13740298 13744220 +
Ahy Ahy9g0654 Chr9 9947709 9950072 +
Aip Aip09g00982 Chr09 13737686 13740728 +
Amo Amo19g0858 Chr19 13978492 13980216 +
Apr Apr10g0343 Chr10 8276021 8280471 +
Arst Arst9g00912 Chr9 9523291 9525836 +
Car Car07g03231 Chr07 59920999 59924456 -
Lapu Lapu10g00995 Chr10 11664022 11667619 +
Lasa Lasa4g00295 Chr4 10323849 10325586 -
Lja Lja3g4394 Chr3 85186252 85189506 +
Mepo Mepo1g04461 Chr1 52368819 52371665 -
Mesa Mesa29g05144 Chr29 84698939 84701288 -
Mtr Mtr8g0314 Chr8 3444222 3447580 +
Pste Pste6g00840 Chr6 3243596 3249191 -
Tsu Tsu08g00289 Chr08 2781214 2784720 +
Vimu Vimu9g01401 Chr9 22508776 22509795 -