Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4394 ATGAATATGGCTCTGGTTTCTCTGTTTGTCTTCTCCTTCTTGCAACTTTACATATCAAATGCAGAAATCTCAGGTCAACCAGGAGTGAACTATGGTCAACTGGGTAACAATCTTCCACCACCAACAACCTCTGTGAATCTCATCAAATCCCTGAAAGCAAAACGCGTCAAAATCTACGACACAAATCCAGAAATCCTCAAAGCCCTCGAAAACACAGACATCCAAGTCTCCATCATGGTCCCGAACGAACTCGTCACCAACATCTCCACCAACCAAACACTCTCCGACCACTGGATCCAATCCAACGTCGTACCCTTCTACCGGAAAACCCTCATCCGCTACCTCCTCGTCGGCAACGAACTCACCAGCTCCACCGGTAACGAAACGTGGCCTCACATCGTCCCCGCCATGCGCAGAATCAAACACTCCCTCACGATCTTCCATCTTCACAAAATCAAGGTTGGAACCCCTTTCGCTATGGACGTTCTGCAATCGTCGTTTCCACCCTCAAACGGTACCTTCAGAAACGACATTGCGTTTAGTCTCATCAAGCCCATGTTGGAATTCTTGCACAAAACCAGCTCGTTTTTCTTCCTGGATGTGTACCCGTTTTTCGCCTGGGCTTCGGATCCGGTCAATATTAACCTCAGTTACGCTCTTTTTGATTCGGGCGATAACATCAGGGTAACGGATTCGGGTACGGGTTTGGTTTACACCAATTTGTTCGACCAGATGGTGGACGCGGTTTACTTCGCAATGGAGCGGCTCGGGTACCCAGGTATTCAGATCTTCATTGCGGAAACGGGTTGGCCCAGTAAAGGAAACCTGGACCAAATTGGAGCGAATGTTCACAACGCTGGCACATATAATAGAAATTTCGTGAAGAAGGTTACTAGAAAACCGCCGGTTGGGACTCCGGCTCGACCGGGTTCGGTTCTTCCGTCTTTCATTTTTGCATTGTTTAATGAGAACTTGAAACCGGGTTTGGGCACTGAGCGAAACTTCGGATTGTTGTACCCGAACGGGTCGAGTGTTTACGAGATTGACCTCTCGGGGAAGACGCCGGAGTCAGAGCTCGCGTCGTTGCCGACAACGGGGGATTACAAGGGGAAGGCATGGTGCGTGGTGGCAGAGGGGGCGAACGAGACTGCGGTGGCGGCTGCGTTGTCGTATGCTTGCTCGCAAGGGAACCGAACTTGTGACCCGATCCAACCTGGGAAATCGTGCTTTAAACCCGACACCGTTGTAGGGCACGCTAGCTATGCATTTAGCTCTTACTGGGCGCAGATGAGACCTGTTGGGGGAACCTGTTTCTTCAATGGACTCGGCATCGCAACTGCAACAAATCCAAGTTATGGATCTTGCAAGTTCCCAAGTGTGACCCTTTGA 1389 0.5025 MNMALVSLFVFSFLQLYISNAEISGQPGVNYGQLGNNLPPPTTSVNLIKSLKAKRVKIYDTNPEILKALENTDIQVSIMVPNELVTNISTNQTLSDHWIQSNVVPFYRKTLIRYLLVGNELTSSTGNETWPHIVPAMRRIKHSLTIFHLHKIKVGTPFAMDVLQSSFPPSNGTFRNDIAFSLIKPMLEFLHKTSSFFFLDVYPFFAWASDPVNINLSYALFDSGDNIRVTDSGTGLVYTNLFDQMVDAVYFAMERLGYPGIQIFIAETGWPSKGNLDQIGANVHNAGTYNRNFVKKVTRKPPVGTPARPGSVLPSFIFALFNENLKPGLGTERNFGLLYPNGSSVYEIDLSGKTPESELASLPTTGDYKGKAWCVVAEGANETAVAAALSYACSQGNRTCDPIQPGKSCFKPDTVVGHASYAFSSYWAQMRPVGGTCFFNGLGIATATNPSYGSCKFPSVTL* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4394 462 Pfam X8 domain 373 443 IPR012946 -
Lja3g4394 462 ProSitePatterns Glycosyl hydrolases family 17 signature. 261 274 IPR000490 GO:0004553|GO:0005975
Lja3g4394 462 Pfam Glycosyl hydrolases family 17 28 349 IPR000490 GO:0004553|GO:0005975
Lja3g4394 462 Gene3D Glycosidases 27 356 - -
Lja3g4394 462 PANTHER BNAC03G35190D PROTEIN 18 454 - -
Lja3g4394 462 Gene3D - 368 459 - -
Lja3g4394 462 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 18 454 IPR044965 GO:0004553|GO:0005975
Lja3g4394 462 SUPERFAMILY (Trans)glycosidases 28 349 IPR017853 -
Lja3g4394 462 SMART X8_cls 372 457 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4394 Lja-Chr3 85186252 85189506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4394 23 462 Glycoside Hydrolase AT3G23770 53.587 9.46e-178 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4394 - - ccaj:109805358 709.138