Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4708 ATGGCTTTGAATTTGCACTCCCCAGTTCAAATAAAACCATCATTTTTCTCTGATATAATTAACAGCTCCACAAAACTTCCAGGTAACTTTGCATTGAAGAGAAAAGAGTGTGACACAAAAGTAACAAAAAGAAGAGTTCATTGCTCAGCAGCAAATTCAATACAACCAGCTTGGCCAGGAACAGCCATTCCTGAACCTAGTGATTTCAAAACATGGGATGAACCAAAACCTATCTCTGTCTTAGGTTCAACTGGTTCAATTGGAACTCAGACACTTAATATAGTTGCCGAGTTTCCAGAAAGATTTAGAATTGTGGGACTTGCAGCCGGTTCAAATGTTACTCTACTTGCCGATCAGATAAAGACATTTAAGCCTCAAGTAGTAGCTCTTAGAGATGAGTCTAAAATTGATGAACTCAAAGAGGCTTTGGCTGATATTGAACACAAACCTGAAATCATCCCTGGAGAACAAGGTGTCATTGAGGTTGCTCGTCACCCTGATGCAGCCACCGTAGTTACCGGAATAGTTGGTTGTGCTGGATTAAAACCAACGGTTGCGGCGATTGAAGCAGGGAAAGACATAGCATTGGCAAACAAAGAGACAATGATTGCTGGAGGAGCTTTTGTTCTTCCTCTTGCTCACAAAAACAACATCAAAATTCTTCCCGCCGATTCAGAACATTCTGCAATTTTTCAGTGTATTCAAGGGTTGCCAAAGGGTGCGCTTAGGAAAATCCAATTAACTGGTTCTGGTGGCACTTTCAGAGAATGGCCTATTGAAAAGATGAAAGATATTAAAGTTGCCGATGCATTAAAACATCCCATTTGGACTTTAGGAAGAAAGATAACCATAGATTCTGCTACCCTCTTCAATAAGGGTTTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAGAATATGATGATATTGAGATTGTTATCCATCCACAATCTATCATACATTCTTTGGTTGAAACACAGGATTCTTCTGTTATTGCGCAATTGGGGTTACCTGATATGCGGTTGCCACTCCTTTATACTTTGTCATGGCCCGAAAGAGTTCATTGTTCTGAAATAACTTGGCCTCGCCTCGATCTTACCAAGTATGGTTCTCTAACATTTCAAGCACCGGACACCAAGAAGTTTCCGTCCGTGAATCTTTGCTACGCTGCTGGACGAGCCGGAGGCACCATGACCGGAGTTATCAGTGCTGCAAACGAGATAGCTGTAGAACTGTTTGTTGCAGAAAAGATTAGCTATCTAGATATTTTCAAGGTTGTGGAGCTAACATGCAATGAACATCAGAAGGAATTGGTAACATCTCCTTCACTTGAAGAAATTCTTCACTATGATCAATGGGCAAGACAATATGCTGCTGGTTTGCAAAAAGCTTTGAGTTTTTGA 1404 0.4067 MALNLHSPVQIKPSFFSDIINSSTKLPGNFALKRKECDTKVTKRRVHCSAANSIQPAWPGTAIPEPSDFKTWDEPKPISVLGSTGSIGTQTLNIVAEFPERFRIVGLAAGSNVTLLADQIKTFKPQVVALRDESKIDELKEALADIEHKPEIIPGEQGVIEVARHPDAATVVTGIVGCAGLKPTVAAIEAGKDIALANKETMIAGGAFVLPLAHKNNIKILPADSEHSAIFQCIQGLPKGALRKIQLTGSGGTFREWPIEKMKDIKVADALKHPIWTLGRKITIDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSLVETQDSSVIAQLGLPDMRLPLLYTLSWPERVHCSEITWPRLDLTKYGSLTFQAPDTKKFPSVNLCYAAGRAGGTMTGVISAANEIAVELFVAEKISYLDIFKVVELTCNEHQKELVTSPSLEEILHYDQWARQYAAGLQKALSF* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4708 467 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 220 303 IPR013644 GO:0005515
Psa4g4708 467 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 78 206 IPR013512 GO:0070402
Psa4g4708 467 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 1 466 IPR003821 GO:0008299|GO:0030604|GO:0046872
Psa4g4708 467 TIGRFAM Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 76 458 IPR003821 GO:0008299|GO:0030604|GO:0046872
Psa4g4708 467 Gene3D - 380 464 - -
Psa4g4708 467 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 368 461 IPR036169 -
Psa4g4708 467 Pfam DXP reductoisomerase C-terminal domain 335 456 IPR026877 -
Psa4g4708 467 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 78 461 IPR003821 GO:0008299|GO:0030604|GO:0046872
Psa4g4708 467 PIRSF Dxp_reductoisomrs 75 466 IPR003821 GO:0008299|GO:0030604|GO:0046872
Psa4g4708 467 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 200 338 - -
Psa4g4708 467 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 75 224 IPR036291 -
Psa4g4708 467 Gene3D - 68 224 - -
Psa4g4708 467 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 1 466 - -
Psa4g4708 467 Coils Coil 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4708 Psa-Chr4 416350336 416354505 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4708 K00099 - gmx:100805316 806.208