Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01000 ATGGCTCTGAATTTGCCCTCTCCAGCTCAAGCGAAGCCCTTTTTTTTCTCATCAACTAACTTCCCAAAACTTCCAGGTAGTTTTTATTTGAAGAGAAAAGAGAGTGACACAACAGTAGAAAGAAGAGTGTATTGCTCTGCTGCAGCTCAACCACCACCACCAGCTTGGCCAGGAACAGCTATTCCAGAGCCCTCTGATTTTAAGACATGGGATGGACCAAAACCCATTACTACACTGAGTATAGTGGCTGAGTTTCCAGAAAGATTTGAAGTTGTAGCACTTGCTGCTGGCTCAAATATTACTCTTCTTGCTGATCAGATAAAGACATTTAAGCCTCAAGTTGTTGGTCTTAGAAATGAGTCCTTAGTGGATGAACTCAGAGAGGCTATTGCTGATCTGGAACACAAACCTGAAATTATCCCCGGAGAGCAAGGAGTCATTGAGGCTGCCCGTCACCCTGATGCAGCCACTGTAGTTACAGGAATAGTTGGCTGTGCAGGATTAAAGCCAACAGTTGCAGCAATTGAGGCAGGGAAAGACATAGCATTGGCCAACAAAGAGACAATGATTGCTGGAGCCCCTTTTGTTCTTCCTCTTGCTCATAAACATAACATAAAAATTCTTCCAGCTGATTCGGAACATTCTGCAATTTTTCAGTCTATCCAGGGTTTGCCAAAGGGCGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGAGAATGGCCAGCAGAAAAGATGAAAGACATTAAACTTGCTGATGCATTAAAGCATCCCATATGGAGTTTAGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAGACTACGATGATATTGAGATTGTTATTCATCCACAATCTATCATACATTCCTTGGTTGAAACACAGGATTCATCTGTCATTGCACAGTTGGGGATACCTGACATGCGCTTACCACTCCTTTACACATTATCTTGGCCAGAGAGAATCTATTGCTCTGAAATAACTTGGCCTCGTCTTGATCTTAGCAAGTACAAACACTTTCCCCTGTATGGTTCTCTAACATTTTTCGCACCTGATGATAAGAAGTTTCCATCGGTTAATCTATGCTATGCTGCTGGACGTGCTGGGGGCACCATGACAGGAGTTCTAAGTGCAGCAAATGAGAAAGCTGTAGAACTGTTTGTTGAAGAAAAGATTAGTTACCTGGACATATTCAAGGTTGTGGAACTAACATGCCAGGAACATCAAAAGGAATTAGTAGCATCTCCTTCTCTCGAAGAAATTATTCACTATGATCAGTGGGCGAGACAATATGCTGCTAGTCTGCAAAAAGCTTCAAGTGTCTGA 1383 0.4223 MALNLPSPAQAKPFFFSSTNFPKLPGSFYLKRKESDTTVERRVYCSAAAQPPPPAWPGTAIPEPSDFKTWDGPKPITTLSIVAEFPERFEVVALAAGSNITLLADQIKTFKPQVVGLRNESLVDELREAIADLEHKPEIIPGEQGVIEAARHPDAATVVTGIVGCAGLKPTVAAIEAGKDIALANKETMIAGAPFVLPLAHKHNIKILPADSEHSAIFQSIQGLPKGALRKILLTGSGGAFREWPAEKMKDIKLADALKHPIWSLGRKITIDSATLFNKGLEVIEAHYLFGADYDDIEIVIHPQSIIHSLVETQDSSVIAQLGIPDMRLPLLYTLSWPERIYCSEITWPRLDLSKYKHFPLYGSLTFFAPDDKKFPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVEEKISYLDIFKVVELTCQEHQKELVASPSLEEIIHYDQWARQYAASLQKASSV* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01000 460 NCBIfam 1-deoxy-D-xylulose-5-phosphate reductoisomerase 77 451 IPR003821 GO:0008299|GO:0030604|GO:0046872
Lapu10g01000 460 PIRSF Dxp_reductoisomrs 74 460 IPR003821 GO:0008299|GO:0030604|GO:0046872
Lapu10g01000 460 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 187 325 - -
Lapu10g01000 460 Gene3D - 373 458 - -
Lapu10g01000 460 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 77 192 IPR013512 GO:0070402
Lapu10g01000 460 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 362 454 IPR036169 -
Lapu10g01000 460 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 78 211 IPR036291 -
Lapu10g01000 460 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 207 290 IPR013644 GO:0005515
Lapu10g01000 460 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 65 454 IPR003821 GO:0008299|GO:0030604|GO:0046872
Lapu10g01000 460 FunFam 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 69 211 - -
Lapu10g01000 460 Gene3D - 76 211 - -
Lapu10g01000 460 FunFam 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 373 457 - -
Lapu10g01000 460 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 24 458 IPR003821 GO:0008299|GO:0030604|GO:0046872
Lapu10g01000 460 Pfam DXP reductoisomerase C-terminal domain 322 449 IPR026877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01000 Lapu-Chr10 11740396 11750488 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01000 K00099 - gmx:100805316 839.336