Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4403 ATGGCTCTGAATTTGCCCTCTCCAGCTCAAGTGAAACCCTTATTTTTCTCTGACACTCTTAACTCAAACACCTCCACAAAACTTTCAGGTAGCTTTGTATTCAAGAAAAAAGAACTTGAGACAACAGTGAAGAGACGAGTTATTTGCTCTGCACAATCGCCACCATCAGCTTGGCCAGGAACAGCTATTCCTGAGCCTAGTGATTTTAAGACATGGGATGGACCAAAACCAATCACTGTCTTGGGATCTACTGGTTCAATTGGAACCCAGACACTTAATATAGTGGCAGAGTTTTCAGACAGATTTAAAATTGTGGGGCTTGCAGCTGGTTCAAACGTCACTCTTCTTGCAGATCAGGTAAAGACATTTAAGCCTCAAGTTGTTGCTCTTAGAGATGAGTCTCGAATTGATGAACTCAAAGAGGCTTTGGCTGATTTGGACCACAAACCTGAAATCCTCGTGGGAGAGCAAGGAGTCGTAGAGGTTGCTGGTCACCCTGATGCAGCCACTGTAGTTACAGGAATAGTTGGTTGTGCAGGATTGAAGCCAACAGTTGCTGCAATTCAAGCAGGGAAAGACATAGCATTGGCAAACAAAGAGACAATGATTGCTGGAGCCCCTTTTATTCTCCCTCTTGCCCACAAGCATAATATAAAATTTCTTCCTGCTGATTCAGAACATTCTGCAATTTTTCAGTGTATCCAGGGGTTGCCAATAGGTGCACTCAGGAAAATCCAATTAACTGCATCTGGAGGTGCTTTCAGGGAATGGCCTGTTGAGAAGATGAAGGATATTAAAGTTTCTGATGCACTAAAGCATCCCATCTGGACTTTGGGAAGAAAGATAACAGTGGACTCTGCTACTCTTTTTAACAAGGGTCTAGAAGTAATTGAAGCACATTACTTATTTGGAGCAGAATATGATGATATTGAGATTGTTATTCATCCACAATCTATCATACATTCTATGATTGAAACACAGGATTCATCTGTTATTGCACAGTTGGGAATACCTGACATGCGATTGCCGCTCCTTTATACATTGTCTTGGCCAGAAAGAATCTATTGCTCTGAAATAACTTACCCTCGCCTTGATCTTACCAAGTATGGTAAGCTAACATTTGAAGCTCCTAACACCGCAAAGTTTCCATCCGTGAATCTTTGCTACGCTGCTGGGCGAGCTGGAGGTACCATGACAGGAGTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAATTGTTTGTTGAAGAAAAGATTAGCTATCTGGATATTTTCAAGGTTGTGGAGCTAACATGTGACGAACATCAAAAAGAATTGGTAGCATTTCCTTCACTTGAAGAAATTGTTCACTATGACCAATGGGCACGACAATATGCTGCTGGTCTGCAAAAAGCTTTAAGTTTTTGA 1404 0.4167 MALNLPSPAQVKPLFFSDTLNSNTSTKLSGSFVFKKKELETTVKRRVICSAQSPPSAWPGTAIPEPSDFKTWDGPKPITVLGSTGSIGTQTLNIVAEFSDRFKIVGLAAGSNVTLLADQVKTFKPQVVALRDESRIDELKEALADLDHKPEILVGEQGVVEVAGHPDAATVVTGIVGCAGLKPTVAAIQAGKDIALANKETMIAGAPFILPLAHKHNIKFLPADSEHSAIFQCIQGLPIGALRKIQLTASGGAFREWPVEKMKDIKVSDALKHPIWTLGRKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSMIETQDSSVIAQLGIPDMRLPLLYTLSWPERIYCSEITYPRLDLTKYGKLTFEAPNTAKFPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVEEKISYLDIFKVVELTCDEHQKELVAFPSLEEIVHYDQWARQYAAGLQKALSF* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4403 467 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 78 205 IPR013512 GO:0070402
Lja3g4403 467 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 1 466 IPR003821 GO:0008299|GO:0030604|GO:0046872
Lja3g4403 467 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 75 224 IPR036291 -
Lja3g4403 467 TIGRFAM Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 76 458 IPR003821 GO:0008299|GO:0030604|GO:0046872
Lja3g4403 467 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 221 303 IPR013644 GO:0005515
Lja3g4403 467 Gene3D - 69 224 - -
Lja3g4403 467 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 78 461 IPR003821 GO:0008299|GO:0030604|GO:0046872
Lja3g4403 467 Gene3D - 380 464 - -
Lja3g4403 467 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 200 338 - -
Lja3g4403 467 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 368 461 IPR036169 -
Lja3g4403 467 PIRSF Dxp_reductoisomrs 75 466 IPR003821 GO:0008299|GO:0030604|GO:0046872
Lja3g4403 467 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 1 466 - -
Lja3g4403 467 Pfam DXP reductoisomerase C-terminal domain 335 456 IPR026877 -
Lja3g4403 467 Coils Coil 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4403 Lja-Chr3 85313952 85319759 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4403 K00099 - gmx:100805316 805.438