Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01382 ATGGCTCTGAATTTGCCCTCTCCTGCACAAGTGAAGCCCTTGTTTTTCTCATCAAAAAACTACCCAAAACTTCCAGTTCAACCATTGTCACCAGCTTGGCCAGGAACAGCTATTCCAGAACCGTCTGATTTTAAGACATGGGACGGTCCAAAACCCATTACTGTCTTAGGATCAACTGGTTCAATTGGAACTCAGACACTGAGTATAGTGGCTGAGTTTCCAGAAAGATTTAAGGTTGTATCACTTGCTGCTGGCTCAAATATTACTCTTCTTGCTGACCAGATAAAGACATTTAAGCCTCAAGTTGTTGGTCTTAGAAATGAGTCCTTAGTGGATGAACTCAGAGAGGCTATTGCTGACATGGAACACAAACCTGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGGCAGCCCGTCACCCTGATTCAACCACAGTAGTTACAGGAATAGTTGGTTGTGCAGGATTGAAGCCAACAGTTGCAGCAATTGAGGCAGGGAAAGACATAGCTTTGGCCAACAAAGAGACAATGATTGCTGGAGCCCCTTTTGTTCTTCCTCTTGCTCATAAACACAACATAAAAATTCTTCCAGCTGATTCGGAACATTCTGCAATTTTTCAGTCTATCCAGGGGTTGCCAAAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGAGAATGGCCAGCTGAAAAGATGAAAGACATTAAACTTGCTGATGCATTAAAGCATCCCATATGGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAACAAGGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAGAGTACGATGATATTGAGATTGTTATTCATCCCCAATCTATCATACATTCCTTGGTTGAAACACAGGATTCATCAGTTATTGCACAATTGGGGATACCTGACATGCGTTTACCCCTCCTTTACACATTATCTTGGCCAGAGAGAATCTACTGCTCTGAAATAACTTGGCCTCGCCTTGATCTTAGCAAGTATGGTTCTTTAACATTTTATTCACCTGATGATAAGAAGTTTCCATCGGTGAATCTATGTTATGCTGCTGGACGTGCTGGGGGCACCATGACAGGAGTTCTCAGTGCAGCAAATGAGAAAGCTGTAGAACTGTTTGTTGAAGAAAAGATTAGTTACCTGGATATATTCAAGGTTGTGGAACTAACATGCCAGGAACATCAAAAAGAATTAGTAGCATCTCCTTCACTCGAAGAAATTATCCACTATGATCAGTGGGCAAGACAATATGCTGCTGGTCTGCAAACAGCTTTAAGTGTTTGA 1329 0.4199 MALNLPSPAQVKPLFFSSKNYPKLPVQPLSPAWPGTAIPEPSDFKTWDGPKPITVLGSTGSIGTQTLSIVAEFPERFKVVSLAAGSNITLLADQIKTFKPQVVGLRNESLVDELREAIADMEHKPEIIPGEQGVIEAARHPDSTTVVTGIVGCAGLKPTVAAIEAGKDIALANKETMIAGAPFVLPLAHKHNIKILPADSEHSAIFQSIQGLPKGALRKILLTGSGGAFREWPAEKMKDIKLADALKHPIWSLGRKITIDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSLVETQDSSVIAQLGIPDMRLPLLYTLSWPERIYCSEITWPRLDLSKYGSLTFYSPDDKKFPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVEEKISYLDIFKVVELTCQEHQKELVASPSLEEIIHYDQWARQYAAGLQTALSV 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01382 442 Pfam DXP reductoisomerase C-terminal domain 310 431 IPR026877 -
Vimu9g01382 442 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 53 436 IPR003821 GO:0008299|GO:0030604|GO:0046872
Vimu9g01382 442 NCBIfam 1-deoxy-D-xylulose-5-phosphate reductoisomerase 51 433 IPR003821 GO:0008299|GO:0030604|GO:0046872
Vimu9g01382 442 Gene3D - 355 439 - -
Vimu9g01382 442 FunFam 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 45 199 - -
Vimu9g01382 442 PIRSF Dxp_reductoisomrs 50 441 IPR003821 GO:0008299|GO:0030604|GO:0046872
Vimu9g01382 442 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 343 436 IPR036169 -
Vimu9g01382 442 Gene3D - 44 199 - -
Vimu9g01382 442 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 27 438 IPR003821 GO:0008299|GO:0030604|GO:0046872
Vimu9g01382 442 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 50 199 IPR036291 -
Vimu9g01382 442 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 195 278 IPR013644 GO:0005515
Vimu9g01382 442 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 175 313 - -
Vimu9g01382 442 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 53 180 IPR013512 GO:0070402
Vimu9g01382 442 FunFam 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 355 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01382 Vimu-Chr9 22259592 22266202 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01382 K00099 - gmx:100805316 826.624