Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0591 ATGGCTCTGAATTTGCCCTCTCCAGCTCAAGTGAAGCccttatttttctcatcaaaTAACTCCACAAAACTTCCAGGTAGCTTTTCTTTGAAGAGAAAAGATTGTGACACCACAGTAGAGAGACGAGTTTATTGCTCTGCCGCTGCTCAATCACCACCACCAGCCTGGCCAGGAACAGCTATTCCAGAGCCTTCTGATTTTAAGACATGGGATGGGCCAAAACTCATTTCTGTCTTAGGATCTACAGGTTCAATCGGAACCCAGACACTGAGTATAGTGGCTGAGTTTCCAGAAAGATTTAAAGTAGTGGGGCTTGCTGCTGGCTCTAATATTACTCTACTTGCTGACCAGatAAAAACATTTAAGCCTCAAGTTGTTGGTCTTAGAAATGAGTCTTTAATTGATGAACTCAAAGAGGCTTTGGCCGATGTGGAACACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGgCTGCTCGTCACCCTGATGCAGCTACTGTAGTTACAGGAATAGTTGGTTGTGCAGGATTAAAGCCAACAGTTGCTGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAAGAGACAATGATTGCTGGAGCCCCTTTTGTTCTTCCTCTTGCTCacaaacataacataaaaattcTCCCCGCAGATTCAGAACATTCTGCCATTTTTCAGATTCTTCTCTACACAGTCTATCCAGGGGTTGCCAAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGAGAATGGCCTGCTGAAAAGATGAAAGACATTAAACTTGCTGATGCATTAAAGCATCCCATATGGAGCTTGGGGAGAAAAATAACTATTGACTCCGCTACCCTTTTCAATAAGGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAGACTACGATGATATTGAGATTGTTATTCATCCACAATCTATCATACATTCCTTGGTTGAAACACAGGATTCATCTGTTATTGCACAATTGGGGATACCAGACATGCGCTTACCGCTCCTTTATACATTATCCTGGCCAGAAAGAATCTATTGCTCTGAAATAACTTGGCCTCGCCTTGATCTTAGCAAGTATGGTTCTCTAACATTTTATCAACCTGATGATAAGAAGTTTCCATCTGTGAATCTTTGCTATGCTGCGGGACGTGCTGGAGGCACCATGACAGGAGTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAAATGTTTGTTGAAGAAAAGGTTAGTTATCTAGATATATTCAAGGTTGTGGAACTGACATGTCAGGAACATCAAAAAGAATTAGTAGCATCTCCTTCACTCGAAGAAATTATTCACTATGACCAGTGGGCACGACAATATGCTGCTAGTCTGCAAAAAGCTTCAAGTGTTTGA 1413 0.4133 MALNLPSPAQVKPLFFSSNNSTKLPGSFSLKRKDCDTTVERRVYCSAAAQSPPPAWPGTAIPEPSDFKTWDGPKLISVLGSTGSIGTQTLSIVAEFPERFKVVGLAAGSNITLLADQIKTFKPQVVGLRNESLIDELKEALADVEHKPEIIPGEQGVIEAARHPDAATVVTGIVGCAGLKPTVAAIEAGKDIALANKETMIAGAPFVLPLAHKHNIKILPADSEHSAIFQILLYTVYPGVAKGALRKILLTGSGGAFREWPAEKMKDIKLADALKHPIWSLGRKITIDSATLFNKGLEVIEAHYLFGADYDDIEIVIHPQSIIHSLVETQDSSVIAQLGIPDMRLPLLYTLSWPERIYCSEITWPRLDLSKYGSLTFYQPDDKKFPSVNLCYAAGRAGGTMTGVLSAANEKAVEMFVEEKVSYLDIFKVVELTCQEHQKELVASPSLEEIIHYDQWARQYAASLQKASSV 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0591 470 TIGRFAM Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 74 461 IPR003821 GO:0008299|GO:0030604|GO:0046872
Ssu2g0591 470 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 218 306 IPR013644 GO:0005515
Ssu2g0591 470 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 371 464 IPR036169 -
Ssu2g0591 470 Pfam DXP reductoisomerase C-terminal domain 338 459 IPR026877 -
Ssu2g0591 470 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 198 341 - -
Ssu2g0591 470 PIRSF Dxp_reductoisomrs 73 470 IPR003821 GO:0008299|GO:0030604|GO:0046872
Ssu2g0591 470 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 1 470 IPR003821 GO:0008299|GO:0030604|GO:0046872
Ssu2g0591 470 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 76 464 IPR003821 GO:0008299|GO:0030604|GO:0046872
Ssu2g0591 470 Gene3D - 67 222 - -
Ssu2g0591 470 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 76 203 IPR013512 GO:0070402
Ssu2g0591 470 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 73 222 IPR036291 -
Ssu2g0591 470 Gene3D - 383 468 - -
Ssu2g0591 470 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 1 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0591 Ssu-Chr2 34224706 34235011 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0591 K00099 - gmx:100805316 878.241