Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00995 ATGGCCATGGCAGTGATTTCTCTGTTCATCTTGTTTTCCTCATTCTCCATATGCAGAAGTGAAATATCAGGGGAAGTAGGAGTGAACTATGGGCGATTGGGGAACAACCTTCCACCGCCGAGAATCTCAGTGCGTCTGATTCAGTCGCTGAAAGCGAGGCGCGTGAAAATCTACGACGCAAACGCGGAAATTCTGGAAGCGCTTCGGAACACGGGAATTCAGGTGTCGATTATGCTCCCGAACGAGCTTGTGGTGAACGCGTCCACCAACCAGACATTCTCCGACCAGTGGGTTCGTTCCAACGTTGTTCCGTTCTACCCAGAAACGCTCATCCGTTACCTCCTCGTCGGCAACGAACTCTTCAGCAGCACAGGCAACGAAACATGGCCCCACATTGTACCCGCGATGCACCGAATCTCACACTCTCTGAAAGCTTTCGGGTTGCGCAAGGTCAAAATCGGAACTCCGCACGCCATGGACGTTCTGCAATCGTCGTTTCCACCCTCAAACGGCACTTTCCGAAACGACATTGCGTTTCATATCATGAAGCCCATGTTACGCTTCCTCCACAAAACACGCTCCTTCTTCTTCCTCGATGTGTACCCGTTTTTCGCCTGGGCCGCCGACCCGGCCCACATTAACCTCACTTATACTCTCTTCGAGTCCAGAAACATAACGGTGACGGACCCGTTAACAGGGTTAATCTACACCAACCTGTTCGACCAGATGGTTGACGCCGTTTATTTCGCAATGAAACGGCTCGGGTACCCGGGTATTCGGATCTTCATCGCGGAAACCGGTTGGCCCAATGGGGGAGATTTGGACCAAGTTGGCGCGAACGTTCACAATGCTGCCACGTATAACAGAAACATAGTGAAGAGGCTTACTAAAAAACCGGTTTTAGGAACCCCGGCTCGACCGGGTTTGGTTCTTCTGGCTTTTATATTCTCGCTTTATAATGAGAACTTAAAACCGGGTTTAGGTTCGGAGCGGCATTTTGGGGTGTTGTACCCGAATGGGTCGAGGGTTTACGACATTGATCTCTCCGGCAACACTCCCGATTCGGAGCTCGCGCCGATACCGCCGTTGATGGATTATAAAGGGAAGGCCTGGTGCGTGGTGGCAGAGGGGGCGAATGTGACGGCGGTGGCGGCGGCGTTATCTTACGCGTGCTCGCAGGGGAACGGAACGTGTGACCCAATACAACCCGGTAACCCGTGCTATGAACCCGATTCAGTGACGGGTCATGCTGATTACGCGTTCAGTGCTTATTGGGCACAGTTTAGGAGCGTGGGAGGAACGTGCTATTTCAATGGGCTCGCAACCCAGAGTGCAACGGATCCAAGTAAGTTGTTTTTCTTAAGAATTGCAAACTGGTCTTTGTAA 1386 0.5195 MAMAVISLFILFSSFSICRSEISGEVGVNYGRLGNNLPPPRISVRLIQSLKARRVKIYDANAEILEALRNTGIQVSIMLPNELVVNASTNQTFSDQWVRSNVVPFYPETLIRYLLVGNELFSSTGNETWPHIVPAMHRISHSLKAFGLRKVKIGTPHAMDVLQSSFPPSNGTFRNDIAFHIMKPMLRFLHKTRSFFFLDVYPFFAWAADPAHINLTYTLFESRNITVTDPLTGLIYTNLFDQMVDAVYFAMKRLGYPGIRIFIAETGWPNGGDLDQVGANVHNAATYNRNIVKRLTKKPVLGTPARPGLVLLAFIFSLYNENLKPGLGSERHFGVLYPNGSRVYDIDLSGNTPDSELAPIPPLMDYKGKAWCVVAEGANVTAVAAALSYACSQGNGTCDPIQPGNPCYEPDSVTGHADYAFSAYWAQFRSVGGTCYFNGLATQSATDPSKLFFLRIANWSL* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00995 461 Pfam X8 domain 371 442 IPR012946 -
Lapu10g00995 461 SUPERFAMILY (Trans)glycosidases 26 347 IPR017853 -
Lapu10g00995 461 Gene3D Glycosidases 25 354 - -
Lapu10g00995 461 Gene3D - 365 452 - -
Lapu10g00995 461 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 12 443 IPR044965 GO:0004553|GO:0005975
Lapu10g00995 461 FunFam Glucan endo-1,3-beta-glucosidase 14 24 352 - -
Lapu10g00995 461 ProSitePatterns Glycosyl hydrolases family 17 signature. 259 272 IPR000490 GO:0004553|GO:0005975
Lapu10g00995 461 SMART X8_cls 370 453 IPR012946 -
Lapu10g00995 461 Pfam Glycosyl hydrolases family 17 26 347 IPR000490 GO:0004553|GO:0005975
Lapu10g00995 461 FunFam Glucan endo-1,3-beta-glucosidase 4 365 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00995 Lapu-Chr10 11664022 11667619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00995 22 448 Glycoside Hydrolase AT3G23770 51.963 8.44e-170 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00995 - - ccaj:109805358 734.176