Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00164 ATGGCTTTTAATTTGCCTTCTCCAGCTCAAGTGAAGCCCTTATTTTTCTCTGATACTTTCAACTCAAACTCCTCCACAAAACTTTCAGGTATCTTTCCATTGAAGAGAAAAGATTCTGACACAACAGTAAAGAGAAGGGTTTTGTGCTCTGTTCAATCACCAACACCAGCTTGGCCAGGAACAGCTATTCCTGAGCCTAATCTTAAGACATGGGATGAACCAAAACCCATCTCTGTCTTAGGATCTACTGGTTCAATTGGAACCCAGACACTTAGTATAGTGGCTGAGTTTCCAGAAAGATTTAAAGTTGTGGGGCTTGCAGCTGGTTCAAACGTTACTCTTTTTGCTGACCAGGTAAAGACATTTAAGCCTCAACTTGTTGCTCTTAGAGATGAGTCTCGAATTGATGAACTCAAAGAGGCTTTGGCTGACGTGGAACACAAACCTGAAATCATTCCTGGAGAGCAAGGAGTAATTGAGGTTGCTCGTCACCCTGAAGCAGCCACTGTAGTTACAGGAATAGTCGGTTGTGCAGGATTGAAGCCAACAGTTGCTGCAATTGAATCAGGAAAAGACATAGCATTAGCAAACAAAGAGACAATGATTGCTGGTGGCCCTTTTGTTCTTCCTCTTGCTCATAAGAATAACATAAAAATTCTTCCCGCTGATTCAGAACATTCTGCCATTTTTCAGTGTATCCAGGGTTTGCCAAAGGGTGCACTTAGGAAAATCCTATTAACTGGATCTGGAGGTGCTTTCAGAGAATGGCCTGTTGAAAAGATGAAAGACATTAAAGTTGCTGACGCATTAAAACATCCCATCTGGAGTTTGGGAAGAAAGATAACTGTGGACTCTGCTACGCTTTTCAATAAGGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAGAATATGATGATATTGAGATTGTTATTCACCCACAATCTATCATACATTCCATGGTTGAAACACAGGATTCATCTGTTATTGCACAGTTGGGGTTACCTGACATGCGCTTGCCGCTCCTTTATACATTGTCTTGGCCAGAAAGAATCCATTGTTCTGAAATAACTTATCCTCGCCTTGATCTTACCAAGTATGGTTCTCTAACATTTCAAGCTCCTGACAATAAGAAGTTTCCATCCGTGGATCTTTGCTATGCTGCTGGACGCGCTGGAGGCACCATGACAGGAGTTATTAGTGCAGCAAACGAGAAAGCTGTAGAACTGTTTGTTGAAGAAAAGATTGGCTATCTGGATATTTTCAAGGTTGTGGAGCTAACATGCGACAAACATAGAGAAGAATTGGTAGCATCTCCTTCACTTGAAGACATTATTCACTATGACCAATGGGCAAGACAATATGCTGCTGCTAGTCTTCAGAAAGCTTCAAGTGTTTGA 1404 0.4152 MAFNLPSPAQVKPLFFSDTFNSNSSTKLSGIFPLKRKDSDTTVKRRVLCSVQSPTPAWPGTAIPEPNLKTWDEPKPISVLGSTGSIGTQTLSIVAEFPERFKVVGLAAGSNVTLFADQVKTFKPQLVALRDESRIDELKEALADVEHKPEIIPGEQGVIEVARHPEAATVVTGIVGCAGLKPTVAAIESGKDIALANKETMIAGGPFVLPLAHKNNIKILPADSEHSAIFQCIQGLPKGALRKILLTGSGGAFREWPVEKMKDIKVADALKHPIWSLGRKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSMVETQDSSVIAQLGLPDMRLPLLYTLSWPERIHCSEITYPRLDLTKYGSLTFQAPDNKKFPSVDLCYAAGRAGGTMTGVISAANEKAVELFVEEKIGYLDIFKVVELTCDKHREELVASPSLEDIIHYDQWARQYAAASLQKASSV* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00164 467 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 77 205 IPR013512 GO:0070402
Rops4g00164 467 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 219 302 IPR013644 GO:0005515
Rops4g00164 467 Gene3D - 68 223 - -
Rops4g00164 467 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 199 337 - -
Rops4g00164 467 Coils Coil 128 148 - -
Rops4g00164 467 Gene3D - 379 465 - -
Rops4g00164 467 NCBIfam 1-deoxy-D-xylulose-5-phosphate reductoisomerase 75 461 IPR003821 GO:0008299|GO:0030604|GO:0046872
Rops4g00164 467 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 77 460 IPR003821 GO:0008299|GO:0030604|GO:0046872
Rops4g00164 467 Pfam DXP reductoisomerase C-terminal domain 334 455 IPR026877 -
Rops4g00164 467 FunFam 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 69 223 - -
Rops4g00164 467 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 74 223 IPR036291 -
Rops4g00164 467 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 367 460 IPR036169 -
Rops4g00164 467 FunFam 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 379 464 - -
Rops4g00164 467 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 29 462 IPR003821 GO:0008299|GO:0030604|GO:0046872
Rops4g00164 467 PIRSF Dxp_reductoisomrs 74 466 IPR003821 GO:0008299|GO:0030604|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00164 Rops-Chr4 5215422 5230330 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00164 K00099 - gmx:100805316 806.979