Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02441 ATGATATGGGATGGACCAAAACCCATTTCTGTCTTGGGATCTACCGGTTCAATTGGAACACAGACACTGAGTATAGTGGCTGAGTTTCCAGAAAGATTTAAAGTTGTGGGGCTTGCTGCTGGCTCTAATATTACTCTTCTTGCTGACCAGATAAAGACATTTAAGCCTCAAATTGTTGGTCTTAGAAATGAGTCTTTAATTGATGAACTCAAAGAGGCCTTGGCTGATGTGGAACACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGGCTGCTCGTCACCCTGATGCAGCCACAGTGGTTACAGGAATAGTTGGTTGTGCAGGATTAAAGCCAACAGTTGCTGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAAGAGACAATGATTGCTGGAGCCCCTTTTGTTCTTCCTCTTGCTCACAAAAATAACATCAAAATTCTTCCCGCAGATTCAGAGCATTCTGCCATTTTTCAGTCTATCCAGGGGTTGCCAAAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGAGAATGGCCTGCTGAAAAGATGAAAGACATTAAACTTAAAGATGCATTAAAGCATCCCATATGGAGTTTGGGGAGAAAAATAACTATCGACTCTGCTACCCTTTTCAACAAGGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAGATTACGACGATATTGAGATTGTTATTCATCCACAATCTATCATACATTCCTTGGTTGAAACACAGGATTCATCTGTTATTTCACAGTTAGGGATACCTGACATGCGCTTACCTCTCCTTTATACATTATCATGGCCAGAAAGAATCTACTGCTCTGAATTAACTTGGCCTCGCCTTGATCTTAGCAAGTATGGTTCTCTAACATTTTTCACACCCGATGATAAGAAGTTTCCATCAGTGAATCTTTGCTATGCTGCTGGACGTGCTGGAGGCACCATGACAGGAGTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAAATGTTTGTGGAAGAAAAGATTAGTTATCTGGATATATTCAAGGTTGTGGAACTAACATGCCAGGAACATCAAAAAGAATTAGTAGCATCTCCTTCACTCGAAGAAATTATTCACTATGACCAGTGGGCACGACAATATGCTGCTAGTCTGCAAAAAGCTTCTAGTGTTTGA 1197 0.4144 MIWDGPKPISVLGSTGSIGTQTLSIVAEFPERFKVVGLAAGSNITLLADQIKTFKPQIVGLRNESLIDELKEALADVEHKPEIIPGEQGVIEAARHPDAATVVTGIVGCAGLKPTVAAIEAGKDIALANKETMIAGAPFVLPLAHKNNIKILPADSEHSAIFQSIQGLPKGALRKILLTGSGGAFREWPAEKMKDIKLKDALKHPIWSLGRKITIDSATLFNKGLEVIEAHYLFGADYDDIEIVIHPQSIIHSLVETQDSSVISQLGIPDMRLPLLYTLSWPERIYCSELTWPRLDLSKYGSLTFFTPDDKKFPSVNLCYAAGRAGGTMTGVLSAANEKAVEMFVEEKISYLDIFKVVELTCQEHQKELVASPSLEEIIHYDQWARQYAASLQKASSV 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02441 398 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 2 398 - -
Cca01g02441 398 Gene3D - 311 396 - -
Cca01g02441 398 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 9 136 IPR013512 GO:0070402
Cca01g02441 398 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 151 234 IPR013644 GO:0005515
Cca01g02441 398 PIRSF Dxp_reductoisomrs 6 398 IPR003821 GO:0008299|GO:0030604|GO:0046872
Cca01g02441 398 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 9 392 IPR003821 GO:0008299|GO:0030604|GO:0046872
Cca01g02441 398 Gene3D - 3 155 - -
Cca01g02441 398 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 131 269 - -
Cca01g02441 398 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 2 398 IPR003821 GO:0008299|GO:0030604|GO:0046872
Cca01g02441 398 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 299 392 IPR036169 -
Cca01g02441 398 TIGRFAM Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 7 389 IPR003821 GO:0008299|GO:0030604|GO:0046872
Cca01g02441 398 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 155 IPR036291 -
Cca01g02441 398 Pfam DXP reductoisomerase C-terminal domain 266 387 IPR026877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02441 Cca-Chr1 53543266 53550280 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02441 K00099 - gmx:100805316 762.681