Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03225 ATGTCCAAAATCGAACCAACCTCTACCCGATTCGTAATTGAACCACTCTCCCAATTCGACCTGTCTACACACTCTCGCACCACCACCGTCCGATCAATCGCCATCACATCACTTTCAAATCCAACCATTCTCTATGTTGGCACTAACTCCGGAACCCTCTTTTCCCTCTCCGCCGACACTAACGACTCCAACACTTCTCAAAACGGCACCGTTCCCTCCGATTCAGCTTCCTTTCTACATAAGCTATCGTTTATTCGAAGCGTTTCGGTTAGCGACTCTCCGGTGGACGCCGTTTTGGTTCTCGCTGATTTAGGGAAGGTTTTATTGCTCTCCGATGGTTCGTTGTTTTTGGTTGATTCGGAATTATCGAATCGCGCTTTTAGGTTAGGGTTTTCTAAAGGTGTTGCGGTGGTAACGAGAAGGAAGATGAGAAATAATGAATCCGAAGGTTTAGGTTTTGATATGAATAATCAAAATCACAGGTTTTTGCAGAAATTGGGAGGGTTGATTGTGAAAGATGGTGAAACACAGAGTGGGGCTTGTGTTTTGGCACTTGCTATTGGGAGAAAGTTGGTGATTGTTGAACTTGTTTTAGGGAGTGGTAAAAGTGGGAAGAGTGATAAAGATTTTAATAATGGTTCTCTTGTTGTTTTGAAAGAGATTCAATGTGTTGATGGTGTGGTTAGTACTATGGTTTGGATTGATGATTCGATTTTCGTTGGTACTGTGAATGGTTATAGTTTGATTTCGTGTGTTAGTGGACAGAGTAGTGTTATATTTTCTTTGCCGGATGTGTCTCGGCCACCGCGATTGAAGTTGTTGCATAGGGAGTGGAGGGTGTTGTTGTTGGTGGATAATGTGGGGGTTATTGTTGATGTTCAAGGGCAGCCAGTTGGGGGCAGTTTGGTGTTTCGGCACGGGTTGCAATCGGTTGGGGAGTTGAGTTTTTATGTGGTTGTTGTGAGTGATGGGAAGATTGAGCTGTATAATAAGAAAAATGGGGTGTGTGCTCAGGTGTTGCCGTTTGGTGGGGAAGGGATTGGACCTTGTGTTGTTGCAAGTGAAGAAGATAAGAGTGGGAAAATTGTTGCTGTTGCAACTGCTACCAAGGTCGTGTGTTATCAGAAATTACCATCTGTAGAACAAATAAAAGACCTTTTGAGGAAGAAGAACTATAAGGGAGCTATATGCTTGGTAGAGGAGCTTGAGTCTGAAGGTGAAATGTCAAAAGACTTGCTCTCATTTATTCATGCTCAAGTGGGGTTCCTATTGCTTTTTGACTTGCATTTTGAAGAAGCCGTGGACCATTTTCTGCTCTCTGATACCATGCAACCTTCTGAAATATTCCCATTTATAATGCGAGATCCAAATCGGTGGTCCTTACTGGTTCCTAGGAATCGGTATTGGGGTTTGCATCCTCCCCCAGCCCCGCTTGAAGATGTAGTAGATGATGGCTTGATGACAATCCAAAGAGCATCTTTCCTAAGGAAAGCAGGTGTAGAAACAATAGTAGATAATGATCTTTTTCTGAATCCACCAAATAGAGCTGATTTATTGGAGTCAGCAATCAAAAACATTAGCAGGTATTTGGAGGCCTCTCGAGAGAAAAAACTGACACAGTCAGTTAGCGAGGGGGTTGACACTCTATTAATGTATCTCTATAGAGCCCTAAATCGTACTGAGGATATGGAGAGGTTGGCATCTTCTACAAACTGTTGTGTTGTGGAGGAGTTGGAACACATGTTAGAAGAGTCGGGGCACCTACGGACCCTTGCCTTTCTATACGCAAGTAAAGGAATGAGCTCAAAAGCTGTGTCTATTTGGCGCATCCTGGCAAGAAATTATTCATCTAGCCTATGGAAAGACCCTGCTTTGGATAATATTATACAGGATAGTGGGGAAAACCTTATTTCTGGCAAGGCAATTGCAGCTGAAGCTTCAAAAATTCTTGAGGAGTCATCTGACCAAGATTTGATTCTCCAACATCTAGGATGGATTGCAGATATCAGCCAGGTTCTTGCAGTCGAAGTTTTAACTTCGGACAAACGAGAGATCCAGCTTTCTCCAGATGAAGTCGTTACATCTATTGATCCACAGAAGGTAGAAATTTTACAGAGGTATCTCCAATGGTTGATTGAACACCAAGACTGCTTCGATACTCAGTTGCATACGTTGTATGCCCTATCACTTGCGAAATCAGCAATTGAAGCCTTTGAGTTTGAAAATATCTCTGAAAATCTTGCTAGTGGAAATACTGAGAGAAAAAATTTGGCTACTTTAAGGAACTCAATCTTTCAGACTCCTGTGCGGGAAAGATTACAAATCTTCTTGCAATCCTCAGACTTGTATGATCCAGAAGAAGTTCTTGACTTGATTGAAGGATCAGAATTATGGTTAGAAAAGGCTATTCTGTATAGAAGACTGGGGCAAGAGACCTTGGTCCTACAAATTTTGGCTTTGAAGCTAGAAGACAGTGAAGCTGCTGAGCAGTACTGTGCCGAGATTGGAAGAGCTGATGCCTACATGCAATTGCTAGAAATGTATTTGGATCCACAAGATGGTAAGGATCCCATGTTTACTGCTGCTGTTCGCCTTCTTCACAATCATGGAGAATCATTGGACCCATTGCAAGTTTTAGAGAAACTATCACCAGATATGCCACTTCAACTTGCTTCTGAGACTTTACTAAGAATGTTCAGGGCCAGAGTTCATCATCATCGTCAAGGACAGATTGTGCATAGTTTATCTCGCGCCGTAGACATTGATGCAAGGTTGTCAAGATTAGATGAAAGATCAAGGCATGTACAGATTAATGATGAGAGTCTCTGTGATTCCTGTAATGCACGCCTTGGTACTAAGTTATTTGCAATGTACCCTGACGATACAGTTGTATGCTACAAGTGTTACCGCCGTCAAGGCGAGTCGGTGTCTGTCTCAGGTCGCAATTTTAAGGAAGACATCCTAATTAAACCAGGTTGGCTTATCATTCTTGCATTCTCTAGTTCTTTCGGGCATGCCATGTTGGAACTTATTTACAAGGATTTGACGGCTGTAGATCATTGTGATCTATTGTTTTCACAATCAATTGCTTATGTAATTTCATTCCCAAGCTGTGGTAGACTGTATATGCGAGTGGCTGATCATTCAACAAATTTGTTGATGGCTTTGAATTTGCGATCAGCTCAAGTGAAGCCCTTATTTTTCTCAGATGCACTCAACTCAGTTAACACCTCCACAAACCTCCCAGGTAACTTTGCATTGAAGAGAAAAGAGGGTAACACAAGAATAAAGAGAAGAGTTTATTGCTCAGCAAGTTCACTACAACCAGCTTGGCCAGGAACAGCTATACCTGAGCCTAGTGATTTTAAAACATGGGATGGACCAAAACCTATCTCTGTTTTAGGCTCAACTGGTTCCATTGGAACTCAGACCCTTAACATAGTGGCTGAGTTTCCAGAAAGATTTAGAGTTGTGGGGCTTGCAGCTGGTTCAAATGTTACTCTTCTTGCTGATCAGATAAAGACATTTAAGCCTCAATTAGTTGCTCTTAGAGACGAGTCGCGAATCGATGAACTCAAAGAGGCTTTGGCTGATTTAGAATACAAACCTGAAATCATCCCTGGAGAACAAGGTGTCATTGAGGTTGCTCGTCACCCTGATGCAGCCACAGTAGTTACAGGAATAGTTGGTTGTGCAGGACTAAAGCCAACGGTTGCGGCGATTGAAGCAAGGAAAGACATAGCATTGGCAAACAAAGAGACAATGATTGCCGGAGGCGCTTTTTGTATCCAAGGGTTGCCAAAGGGTGCACTTAGGAAAATCCAACTAACTGGCTCTGGGGGTGCTTTTAGAGAATGGCCTGCTGAAAAGATGAAAGACATTAAAGTTGCTGATGCATTAAAGCATCCAATCTGGAGTTTGGGAAGAAAGATAACTGTAGATTCTGCTACCCTTTTCAATAAGGGTTTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAGAATATGATGATATTGAAATTGTTATTCATCCACAATCTATCATACATTCATTGGTTGAAACACAGGTTTAA 4074 0.4215 MSKIEPTSTRFVIEPLSQFDLSTHSRTTTVRSIAITSLSNPTILYVGTNSGTLFSLSADTNDSNTSQNGTVPSDSASFLHKLSFIRSVSVSDSPVDAVLVLADLGKVLLLSDGSLFLVDSELSNRAFRLGFSKGVAVVTRRKMRNNESEGLGFDMNNQNHRFLQKLGGLIVKDGETQSGACVLALAIGRKLVIVELVLGSGKSGKSDKDFNNGSLVVLKEIQCVDGVVSTMVWIDDSIFVGTVNGYSLISCVSGQSSVIFSLPDVSRPPRLKLLHREWRVLLLVDNVGVIVDVQGQPVGGSLVFRHGLQSVGELSFYVVVVSDGKIELYNKKNGVCAQVLPFGGEGIGPCVVASEEDKSGKIVAVATATKVVCYQKLPSVEQIKDLLRKKNYKGAICLVEELESEGEMSKDLLSFIHAQVGFLLLFDLHFEEAVDHFLLSDTMQPSEIFPFIMRDPNRWSLLVPRNRYWGLHPPPAPLEDVVDDGLMTIQRASFLRKAGVETIVDNDLFLNPPNRADLLESAIKNISRYLEASREKKLTQSVSEGVDTLLMYLYRALNRTEDMERLASSTNCCVVEELEHMLEESGHLRTLAFLYASKGMSSKAVSIWRILARNYSSSLWKDPALDNIIQDSGENLISGKAIAAEASKILEESSDQDLILQHLGWIADISQVLAVEVLTSDKREIQLSPDEVVTSIDPQKVEILQRYLQWLIEHQDCFDTQLHTLYALSLAKSAIEAFEFENISENLASGNTERKNLATLRNSIFQTPVRERLQIFLQSSDLYDPEEVLDLIEGSELWLEKAILYRRLGQETLVLQILALKLEDSEAAEQYCAEIGRADAYMQLLEMYLDPQDGKDPMFTAAVRLLHNHGESLDPLQVLEKLSPDMPLQLASETLLRMFRARVHHHRQGQIVHSLSRAVDIDARLSRLDERSRHVQINDESLCDSCNARLGTKLFAMYPDDTVVCYKCYRRQGESVSVSGRNFKEDILIKPGWLIILAFSSSFGHAMLELIYKDLTAVDHCDLLFSQSIAYVISFPSCGRLYMRVADHSTNLLMALNLRSAQVKPLFFSDALNSVNTSTNLPGNFALKRKEGNTRIKRRVYCSASSLQPAWPGTAIPEPSDFKTWDGPKPISVLGSTGSIGTQTLNIVAEFPERFRVVGLAAGSNVTLLADQIKTFKPQLVALRDESRIDELKEALADLEYKPEIIPGEQGVIEVARHPDAATVVTGIVGCAGLKPTVAAIEARKDIALANKETMIAGGAFCIQGLPKGALRKIQLTGSGGAFREWPAEKMKDIKVADALKHPIWSLGRKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSLVETQV 1357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03225 1357 Pfam Region in Clathrin and VPS 703 850 IPR000547 GO:0006886|GO:0016192
Car07g03225 1357 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1128 1264 IPR036291 -
Car07g03225 1357 Coils Coil 1182 1202 - -
Car07g03225 1357 Pfam Vacuolar sorting protein 39 domain 1 546 616 IPR019452 -
Car07g03225 1357 Pfam CNH domain 43 340 IPR001180 -
Car07g03225 1357 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 1267 1332 IPR013644 GO:0005515
Car07g03225 1357 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 677 857 IPR000547 GO:0006886|GO:0016192
Car07g03225 1357 Gene3D - 1122 1272 - -
Car07g03225 1357 Pfam Vacuolar sorting protein 39 domain 2 863 970 IPR019453 -
Car07g03225 1357 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1131 1259 IPR013512 GO:0070402
Car07g03225 1357 PANTHER CNH DOMAIN CONTAINING 12 986 IPR032914 GO:0016192
Car07g03225 1357 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 41 373 IPR011047 -
Car07g03225 1357 PANTHER VAM6/VPS39-LIKE PROTEIN 12 986 - -
Car07g03225 1357 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1261 1355 - -
Car07g03225 1357 ProSiteProfiles Citron homology (CNH) domain profile. 27 355 IPR001180 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03225 Car-Chr7 59849896 59869137 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03225 K20177 - gmx:100777041 1543.87