Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01278 ATGGCTCTGAATTTGCCCTCTCCCGCACAAGTGAAGCCCTTCTTTTTCTCATCAAATAACTACCCAAAACTTCCAGGTAGTTTTTCTTTGAAGAGAAAAGAGAGTGAGACAACGGTAGAAAGAAGAGTTTATTGCTCTGTTGCAGTTCAACCACTGCCACCAGCTTGGCCAGGAACAGCTATTCCAGAACCTTCTGATTTTAAGACATGGGATGGTCCCAAACCCATTACTGTCTTAGGATCAACTGGTTCAATTGGAACTCAGACCCTGAGTATAGTGGCTGAGTTTCCAGAAAGATTTAAAGTAGTGTCACTTGCTGCTGGCTCAAATATTACTCTTCTTGCTGACCAGATAAAGACGTTTAAGCCTCAAGTTGTTGGTCTTAGAAATGAGTCCTTAGTGGATGAACTCAGAGAAGCTATTGCTGACATGGAACACAAACCTGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGGCTGCCCGTCACCCCGATGCAACCACAGTAGTTACAGGAATAGTTGGTTGTGCAGGATTGAAGCCAACAGTTGCAGCAATTGAGGCAGGGAAAGACATAGCTTTGGCCAACAAAGAGACAATGATTGCTGGAGCCCCTTTTGTTCTTCCTCTTGCTCATAAGCACAACATCAAAATTCTTCCAGCTGATTCTGAACATTCTGCAATTTTTCAGTCTATCCAGGGGTTGCCAAAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGAGAATGGCCAGCTGAAAAGATGAAAGACATTAAACTTGCTGATGCACTAAAGCATCCCATATGGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAACAAGGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAGACTACGATGATATTGAGATTGTTATTCATCCACAATCTATCATTCATTCCTTGGTTGAAACACAGGATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGTTTACCCCTCCTTTACACATTATCTTGGCCAGAGAGAATCTACTGCTCTGAAATAACTTGGCCTCGCCTTGATCTTAGCAAGTATGGTTCTTTAACATTTTATGCACCTGATGATAAGAAGTTTCCATCTGTGAATCTATGTTACGCTGCTGGACGTGCTGGGGGCACAATGACAGGAGTTCTCAGTGCAGCAAATGAGAAAGCTGTAGAACTGTTTGTTGAAGAAAAGATTAGTTACTTGGATATATTCAAGGTTGTGGAACTAACATGCCAGGAACATCAAAGAGAATTAGTAGCATCTCCTTCACTCGAAGAAATTATTCACTATGATCAGTGGGCAAGACAATATGCTGCTGGTCTGAAAAAATTTTCAAGTGTTTGA 1398 0.4199 MALNLPSPAQVKPFFFSSNNYPKLPGSFSLKRKESETTVERRVYCSVAVQPLPPAWPGTAIPEPSDFKTWDGPKPITVLGSTGSIGTQTLSIVAEFPERFKVVSLAAGSNITLLADQIKTFKPQVVGLRNESLVDELREAIADMEHKPEIIPGEQGVIEAARHPDATTVVTGIVGCAGLKPTVAAIEAGKDIALANKETMIAGAPFVLPLAHKHNIKILPADSEHSAIFQSIQGLPKGALRKILLTGSGGAFREWPAEKMKDIKLADALKHPIWSLGRKITIDSATLFNKGLEVIEAHYLFGADYDDIEIVIHPQSIIHSLVETQDSSVIAQLGIPDMRLPLLYTLSWPERIYCSEITWPRLDLSKYGSLTFYAPDDKKFPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVEEKISYLDIFKVVELTCQEHQRELVASPSLEEIIHYDQWARQYAAGLKKFSSV 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01278 465 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 366 459 IPR036169 -
Vian9g01278 465 Gene3D - 378 462 - -
Vian9g01278 465 FunFam 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 378 462 - -
Vian9g01278 465 Gene3D - 67 222 - -
Vian9g01278 465 PIRSF Dxp_reductoisomrs 73 464 IPR003821 GO:0008299|GO:0030604|GO:0046872
Vian9g01278 465 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 24 461 IPR003821 GO:0008299|GO:0030604|GO:0046872
Vian9g01278 465 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 76 459 IPR003821 GO:0008299|GO:0030604|GO:0046872
Vian9g01278 465 Pfam DXP reductoisomerase C-terminal domain 333 454 IPR026877 -
Vian9g01278 465 FunFam 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 68 222 - -
Vian9g01278 465 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 76 203 IPR013512 GO:0070402
Vian9g01278 465 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 73 222 IPR036291 -
Vian9g01278 465 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 218 301 IPR013644 GO:0005515
Vian9g01278 465 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 198 336 - -
Vian9g01278 465 NCBIfam 1-deoxy-D-xylulose-5-phosphate reductoisomerase 74 456 IPR003821 GO:0008299|GO:0030604|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01278 Vian-Chr9 27201296 27208591 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01278 K00099 - gmx:100805316 885.56