Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00346 ATGGCTTTGAATTTGTCTTCCCCAGCTCAAGTGAAACCTTTATTTTTCTCTGATACGATCAACTCAGTTAACACCTCCACAAAACTTTTAGGTAGCTTTGCATTGAAGAAAAAAGAGAGTGACACAAAAGTACTAAGGAGAAGAGTTTATTGCTCAGCAAATTCACCACAACCAGCTTGGCCAGGAACAGCTATACCTGAGCCTAGTGATTTTAAAACATGGGATGGACCAAAACCCATCTCTGTCTTAGGCTCAACTGGTTCTATTGGAACTCAGACACTTAATATAGTGGCTGAGTTTCCAGAAAGATTCAGAGTTGTCGGGCTCGCAGCTGGTTCAAATGTTACTCTTCTCGCTGATCAGATAAAGACATTTAAGCCTCAAGTAGTAGCTCTTAGAGATGAGTCTAAAATTGATGAACTCAAAGAGGCTTTGGCTGATTTGGATTACAAACCTGAAATCATCCCTGGAGAACAAGGTGTCATTGAGGTTGCTCGTCACCCGGATGCAGCCACAGTAGTTACTGGAATAGTCGGTTGTGCAGGATTAAAGCCAACAGTTGCCGCAATTGAAGCAGGGAAGGACATAGCATTAGCAAACAAAGAGACAATGATTGCCGGAGGCGCTTTCGTTCTTCCACTTGCTCACAAAAATAAAATCAAAATTCTTCCTGCTGATTCAGAACATTCTGCCATTTTTCAGTGTATCCAAGGTTTGCCAAAGGGTGCACTTAGGAAAATCCAATTAACTGGTTCGGGAGGTGCTTTCAGAGAATGGCCTATTGAAAAGATGAAAGATATTAAAGTCAAAGATGCATTAAAGCATCCCATTTGGACTTTGGGAAGAAAGATAACTGTAGATTCTGCTACCCTTTTCAATAAGGGTTTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAGAATATGATGATATTGAGATTGTTATTCATCCACAATCTATTATACATTCATTGGTTGAAACACAGGATTCTTCTGTAATTGCACAGTTGGGATTACCTGACATGCGGTTGCCACTCCTTTATACTTTGTCTTGGCCAGAAAGAGTCTATTGTTCTGAAATAACTTGGCCTCGCCTTGATCTTACCAAGTATGGTTCTCTAACATTTCAAGCTCCAGACACTAAGAAGTTTCCATCTGTGAATCTTTGCTATGCTGCCGGACGTGCTGGAGGCACTATGACCGGAGTTATTAGCGCTGCAAACGAGATAGCTGTAGAATTATTTGTTGCAGAAAAGATTAGCTATCTAGATATTTTCAAGGTTGTGGAGCTAACATGTAATGAACATCAAAAAGATTTGGTAGTATCTCCTTCACTTGAAGATATTCTTCACTATGATCAATGGGCAAGACAATATGCTGCTGGTTTGCAAAAAGCTTTAAGTGTTTGA 1410 0.4007 MALNLSSPAQVKPLFFSDTINSVNTSTKLLGSFALKKKESDTKVLRRRVYCSANSPQPAWPGTAIPEPSDFKTWDGPKPISVLGSTGSIGTQTLNIVAEFPERFRVVGLAAGSNVTLLADQIKTFKPQVVALRDESKIDELKEALADLDYKPEIIPGEQGVIEVARHPDAATVVTGIVGCAGLKPTVAAIEAGKDIALANKETMIAGGAFVLPLAHKNKIKILPADSEHSAIFQCIQGLPKGALRKIQLTGSGGAFREWPIEKMKDIKVKDALKHPIWTLGRKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSLVETQDSSVIAQLGLPDMRLPLLYTLSWPERVYCSEITWPRLDLTKYGSLTFQAPDTKKFPSVNLCYAAGRAGGTMTGVISAANEIAVELFVAEKISYLDIFKVVELTCNEHQKDLVVSPSLEDILHYDQWARQYAAGLQKALSV 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00346 469 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 222 305 IPR013644 GO:0005515
Trre15g00346 469 NCBIfam 1-deoxy-D-xylulose-5-phosphate reductoisomerase 78 460 IPR003821 GO:0008299|GO:0030604|GO:0046872
Trre15g00346 469 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 80 208 IPR013512 GO:0070402
Trre15g00346 469 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 31 466 IPR003821 GO:0008299|GO:0030604|GO:0046872
Trre15g00346 469 FunFam 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 382 466 - -
Trre15g00346 469 Gene3D - 382 466 - -
Trre15g00346 469 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 370 463 IPR036169 -
Trre15g00346 469 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 202 340 - -
Trre15g00346 469 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 80 463 IPR003821 GO:0008299|GO:0030604|GO:0046872
Trre15g00346 469 FunFam 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 72 226 - -
Trre15g00346 469 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 77 226 IPR036291 -
Trre15g00346 469 Gene3D - 71 226 - -
Trre15g00346 469 PIRSF Dxp_reductoisomrs 77 468 IPR003821 GO:0008299|GO:0030604|GO:0046872
Trre15g00346 469 Pfam DXP reductoisomerase C-terminal domain 337 458 IPR026877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00346 Trre-Chr15 2386438 2391755 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00346 K00099 - gmx:100805316 810.831