Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0343 ATGGCCTTGATTTGTCTTTTGGTCATTTCAATCTTATTCTCTATATCTAAAACAGGTGGTGAAATCTCAGGGCAACCAGGAGTGAACTATGGGCAACTGGGGAACAACCTTCCATCAGCAACAACCTCAGTGAAACTCATCAAATCATTGAAAGCCAAACGCGTTAAAATCTATGATGCAAACCCAGAAATCCTCAAAGCCCTAAAAAACACGGGTCTTCAAGTTTCCATAATGGTCCCTAACCAGCTTGTCCTCAACGTCTCCACAAACCAAACATTCTCAGATCAATGGGTTCAATCCAACGTTGTACCCTTCTACCCTCAAACACTCATCCGCTACCTCCTCGTTGGCAACGAACTCATCAGCACTACAGGGAAGGAAATATGGCCCCACATTGTACCCGCGATGCACAGAATCACACATTCCCTCAAAACCTTCCATTTACACAAGGTGAAAGTGGGGACTCCCTCTGCCATGGACGTTTTGGAATCGTCGTTTCCACCATCAAACGGCACTTTCAGAAACGACATTGCGTTTCAGGTTATGAAACCCATGTTAAAACTTTTGCACAAAACCCGCTCATTTTTATTCTTGGATGTGTACCCATATTTCGCATGGTCTTCGGATCCCACCCACATTAACCTCAGTTATGCTCTTTTTGATTCCAACATCACAGTAACGGATTCGGGTACGGGTTTGGTTTACACTAACTTGTTTGACCAAATGGTTGATGCCGTTTATTTTGCAATGAAACGACTCGGGTATCCGGGTATTCGGATCTTTATTGCTGAAACGGGTTGGCCCAATGGAGGAGACTTGGATCAAATAGGAGCAAACATTCACAACGCTGCCACGTATAATAGAAACTTTGTAAAAAGAGTTACAAAAAACCCGTTTACTGGGACACCGGCTCGACCCGGTTCAGTTCTTCCCTCGTTTATTTTTTCTCTTTATAATGAGAATTTGAAACCGGGTTTGGGTACGGAGCGACATTTCGGGCTGTTGTACCCGAATGGGTCAAGTGTTTATGAAATTGATCTTTCTGGGAAGACGCCGGAGTCGGAGTTTCCGCCGTTGCCGCCGGCGGTGAATTATAAAGGGAAGGCGTGGTGTGTGGTGGCCGAGGGAGCGAACGTGACGGCGGTGGAGGCGGCGTTATCGTACGCTTGCTCGCAGGGAAATAAAACCTGTGACGCGATCCAACCCGGTAAACCGTGTTTTGAACCGAACACAGTGGTGGGGCATGCTAACTATGCGTTTAGTTCTTATTGGGCGCAATTTAGGGCTTTGGGTGGAACTTGTTATTTCAATGGCCTTGCCACAGCAATTGCAAAAGATCCAAGTTATGGATCTTGTAAGTTTCCAAGTGTGACTCTTTGA 1380 0.458 MALICLLVISILFSISKTGGEISGQPGVNYGQLGNNLPSATTSVKLIKSLKAKRVKIYDANPEILKALKNTGLQVSIMVPNQLVLNVSTNQTFSDQWVQSNVVPFYPQTLIRYLLVGNELISTTGKEIWPHIVPAMHRITHSLKTFHLHKVKVGTPSAMDVLESSFPPSNGTFRNDIAFQVMKPMLKLLHKTRSFLFLDVYPYFAWSSDPTHINLSYALFDSNITVTDSGTGLVYTNLFDQMVDAVYFAMKRLGYPGIRIFIAETGWPNGGDLDQIGANIHNAATYNRNFVKRVTKNPFTGTPARPGSVLPSFIFSLYNENLKPGLGTERHFGLLYPNGSSVYEIDLSGKTPESEFPPLPPAVNYKGKAWCVVAEGANVTAVEAALSYACSQGNKTCDAIQPGKPCFEPNTVVGHANYAFSSYWAQFRALGGTCYFNGLATAIAKDPSYGSCKFPSVTL* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0343 459 ProSitePatterns Glycosyl hydrolases family 17 signature. 258 271 IPR000490 GO:0004553|GO:0005975
Apr10g0343 459 Gene3D - 364 456 - -
Apr10g0343 459 SMART X8_cls 369 454 IPR012946 -
Apr10g0343 459 Gene3D Glycosidases 26 353 - -
Apr10g0343 459 PANTHER BNAC03G35190D PROTEIN 12 451 - -
Apr10g0343 459 Pfam Glycosyl hydrolases family 17 27 346 IPR000490 GO:0004553|GO:0005975
Apr10g0343 459 Pfam X8 domain 370 441 IPR012946 -
Apr10g0343 459 SUPERFAMILY (Trans)glycosidases 27 346 IPR017853 -
Apr10g0343 459 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 12 451 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0343 Apr-Chr10 8276021 8280471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0343 16 459 Glycoside Hydrolase AT3G23770 55.111 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0343 - - ccaj:109805358 744.577