Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01401 ATGCACCGAATCTCACACTCTCTGAAAGTTTTCCGTTTGCACAAGGTAAAAATCGGAACTCCGCACGCCATGGACGTTTTGCAATCGTCGTTTCCACCCTCAAACGGCACTTTCAGAAACGACATAGCGCTTCCCATAATCAAGCCAATGCTACACTTCCTCCACAAAACACGCTCTTTTTTCTTCCTAGACGTGTACCCGTTTTTCGCGTGGGCCTCCGACCCGACCAATATTAACCTCGATTACAGTCTCTTCGAGTCCAGAAACATCACGGTAACGGACTCGTTAACTGGGTTAATTTACACCAACCTATTCGACCAGATGGTTGACGCCGTTTATTTCGCCATGAAACGTCTCGGGTACCCGGGTATTCGGATCTTCATCGCCGAAACGGGTTGGCCCAATGGGGGAGACTTGGACCAAGTTGGCGCCAACGTCCACAATGCTGCCACGTATAACCGAAACGTTGTGAAAAGGCTTACCCAAAAACCGGTTTTGGGAACCCCGGCTCGACCGGGTTTGGTTCTTCCGGCTCTCATATTTGCGCTTTATAATGAGAACTTAAAGCCGGGTTTAGGTTCGGAGCGGCATTTTGGGTTGTTGTACCCGAATGGGTCGAGGGTTTACGACATTGATCTCTCCGGCAAGACTCCGGAGTCGGAGCTTGCGCCAGTGCCGCCGGCGGTGGATTATAAAGGGGAGGCGTGGTGTGTAGTGGCAGAGGGGGCGAATGTGACGGAGGTGGCGGCGGCGTTATCTTTCGCTTGCTCGCAGGGAAATGGAACGTGTGACCCGATTCAACCTGGGAACCCGTGTTATAAACCCGATTCGGTGACGGGTCATGCTGATTACGCGTTCAGTGCTTATTGGGCGCAGTTTAGGCGCGTGGGAGGAACGTGCTCTTTCAATGGGCTTGCAACCCAAACTGCAAAGGATCCAAGTAAGTTTTGTTTTGCAGAATTAGTAAATTTGCAAAGTGGTTTCGAAATGGGCCTATTTCTTATAATTTCTTTAAAATAA 1020 0.502 MHRISHSLKVFRLHKVKIGTPHAMDVLQSSFPPSNGTFRNDIALPIIKPMLHFLHKTRSFFFLDVYPFFAWASDPTNINLDYSLFESRNITVTDSLTGLIYTNLFDQMVDAVYFAMKRLGYPGIRIFIAETGWPNGGDLDQVGANVHNAATYNRNVVKRLTQKPVLGTPARPGLVLPALIFALYNENLKPGLGSERHFGLLYPNGSRVYDIDLSGKTPESELAPVPPAVDYKGEAWCVVAEGANVTEVAAALSFACSQGNGTCDPIQPGNPCYKPDSVTGHADYAFSAYWAQFRRVGGTCSFNGLATQTAKDPSKFCFAELVNLQSGFEMGLFLIISLK 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01401 339 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 1 309 IPR044965 GO:0004553|GO:0005975
Vimu9g01401 339 Pfam X8 domain 236 307 IPR012946 -
Vimu9g01401 339 SUPERFAMILY (Trans)glycosidases 7 212 IPR017853 -
Vimu9g01401 339 Gene3D Glycosidases 1 219 - -
Vimu9g01401 339 SMART X8_cls 235 319 IPR012946 -
Vimu9g01401 339 Pfam Glycosyl hydrolases family 17 1 212 IPR000490 GO:0004553|GO:0005975
Vimu9g01401 339 FunFam Glucan endo-1,3-beta-glucosidase 4 230 321 - -
Vimu9g01401 339 Gene3D - 231 327 - -
Vimu9g01401 339 ProSitePatterns Glycosyl hydrolases family 17 signature. 124 137 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01401 Vimu-Chr9 22508776 22509795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01401 1 313 Glycoside Hydrolase AT3G23770 55.063 3.26e-129 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01401 - - pvu:PHAVU_010G0238001 607.831