Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10449 ATGGCTCTGAATTTGCCCTCTCCAGCTCAAGTGAAGCCCTTATTTTTCTCAGATACTCTTAACTCAAACACCTCCACAAAACTTTCAGGTAGCTTTCCATTAAAGAGGAAAGATTCTGACACAACAACAAGGAGACGATCAGTTCATTGCTCTGTGCAATCACCTCCACCAGCTTGGCCAGGCACAGCTATTCCAGAGCCTAATCTTAAGACATGGGATGGACCAAAACCCATCTCTGTCTTAGGATCTACTGGTTCAATTGGAACCCAGACACTTAGTATAGTGGCTGAGTTTCCAGATAGATTTAAAATTGTGGGGCTTGCAGCTGGTTCAAACGTTACTCTTCTTGCTGATCAGGTAAAGACATTTAAGCCTGAAGTTGTTGCTCTTAGAGATGAGTCTCGAATTGATGAACTCAAAGAGGCTTTGGCTGATATGGAACAACAACCAGAAATTATCCCTGGAGAGCAAGGAGTCATTGAGGTTGCTCGTCACCCTGATGCTGCCACTGTAGTTACAGGAATTGTTGGTTGTGCAGGATTGAAGCCAACAGTTGCTGCAATTGAAGCAGGGAAAGATATAGCATTGGCCAACAAAGAGACAATGATTGCTGGAGGCCCTTTTGTTCTTCCTCTTGCTCACAAGCACAACATAAAAATTCTTCCGGCTGATTCAGAACATTCTGCCATTTTTCAGTGTATCCAAGGTTTGCCAAAAGGTGCACTTAGGAAAATCCTATTAACCGGATCTGGTGGTGCTTTCAGAGAATGGCCTGTAGAAAAGATGAAAGACATTAAAGTTGCTGATGCATTAAAGCATCCCATCTGGAGTTTGGGAAGAAAGATAACTGTGGACTCTGCTACCCTTTTTAATAAGGGTCTAGAAGTAATTGAAGCACATTATTTGTTTGGAGCAGAATATGATGATATTGAGATTGTTATTCACCCACAATCTATCATACATTCCATGATTGAAACACAGGATTCATCTGTTATTGCACAGTTGGGGTTACCTGACATGCGGTTGCCGCTTCTTTATACATTGTCTTGGCCAGAAAGAATCTATTGCTCTGAAATAACTTGGCCTCGCCTTGATCTTACCAAGTATGGTTCTCTAACATTTCAAGCTCCTGACAATGCAAAGTTTCCATCCGTAAATCTTTGCTATGCTGCTGGACGTGCTGGAGGCACCATGACAGGAGTTATCAGTGCAGCAAACGAGAAAGCTGTAGAAATGTTTGTTGAAGAAAAGATTAGCTATCTGGATATTTTCAAGGTTGTGGAGCTAACATGTCAGGAACATCAAAAAGAATTGGTAGCATCTCCTTCACTTGAAGAAATTATTCACTATGACCAATGGGCACGACAATATGCGGCTAGTCTGCAAAAAGCTTCAAGTGTTTGA 1404 0.4188 MALNLPSPAQVKPLFFSDTLNSNTSTKLSGSFPLKRKDSDTTTRRRSVHCSVQSPPPAWPGTAIPEPNLKTWDGPKPISVLGSTGSIGTQTLSIVAEFPDRFKIVGLAAGSNVTLLADQVKTFKPEVVALRDESRIDELKEALADMEQQPEIIPGEQGVIEVARHPDAATVVTGIVGCAGLKPTVAAIEAGKDIALANKETMIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPKGALRKILLTGSGGAFREWPVEKMKDIKVADALKHPIWSLGRKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSMIETQDSSVIAQLGLPDMRLPLLYTLSWPERIYCSEITWPRLDLTKYGSLTFQAPDNAKFPSVNLCYAAGRAGGTMTGVISAANEKAVEMFVEEKISYLDIFKVVELTCQEHQKELVASPSLEEIIHYDQWARQYAASLQKASSV. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10449 467 Coils Coil 129 149 - -
Seca4g10449 467 MobiDBLite consensus disorder prediction 25 44 - -
Seca4g10449 467 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 368 461 IPR036169 -
Seca4g10449 467 Gene3D - 70 224 - -
Seca4g10449 467 Pfam DXP reductoisomerase C-terminal domain 335 456 IPR026877 -
Seca4g10449 467 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 200 338 - -
Seca4g10449 467 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 78 206 IPR013512 GO:0070402
Seca4g10449 467 PIRSF Dxp_reductoisomrs 75 467 IPR003821 GO:0008299|GO:0030604|GO:0046872
Seca4g10449 467 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 220 303 IPR013644 GO:0005515
Seca4g10449 467 Gene3D - 380 465 - -
Seca4g10449 467 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 75 224 IPR036291 -
Seca4g10449 467 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 28 465 IPR003821 GO:0008299|GO:0030604|GO:0046872
Seca4g10449 467 FunFam 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 70 224 - -
Seca4g10449 467 FunFam 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 380 464 - -
Seca4g10449 467 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 78 461 IPR003821 GO:0008299|GO:0030604|GO:0046872
Seca4g10449 467 NCBIfam 1-deoxy-D-xylulose-5-phosphate reductoisomerase 76 458 IPR003821 GO:0008299|GO:0030604|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10449 Seca-Chr4 240163880 240172028 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10449 K00099 - gmx:100805316 829.706