Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0858 ATGGCTACTATCATTACAGTTTCTCTATTAATTATCTCCCTTTCATTCTTCTCCATATCCAGTGCAAAAATCTCAGGTCAACCTGGAATCAACTACGGTCAATTGGGCAACAATCTTCCACCTCCAAAAACCTCAATAAACCTAATCAAATCCCTAAAAGCCAAACGCGTCAAAATCTATGATACGAATCCATTGATCCTAAAATCCCTAGAAAACACGAACCTCCAAGTYTCAATCATGGTGCCAAACGAACTCGTCTCAAAAATCTCAACAAACCAAACACTCTCAGACCAATGGGTCCAATCCAACGTCGCACCYTTCTACCACAAAACCCTAATCCGATACCTCCTCGTCGGAAACGAACTCATCAGCTCCACGTCACCTGACACGTGGCACCACATCGTTCCCGCGATGCAGAGGATCAAAACCTCCCTAACAACGTTCCGTTTGCACAAGGTGAAGGTTGGAACGCCCTGTGCCMTGGACGTGCTGGAATCGTCGTTTCCACCTTCAAATGGCACATTCAGAAACGACATTGCGTTTCGCGTCATGAAGCCKATGCTGAAATKTTTRTCCAAAACCAAATCGTTTTTCTTCTTGGATGTGTACCCGTTTTTCGCGTGGTCCTCGGACCCTAAAAACATTGACCTTAATTACGCGCTATTTGAGTCCAAGAACATAACGGTAACGGACTCGGGTACGGGTTTGGTTTACCATAATTTGTTTGATCAGATGGTGGACGCGGTTTATTTTGCAATGAACCGGATCGGGTATCCGGATATTCGGATCTTTATTGCTGAAACGGGTTGGCCCAACGGAGGAAACTTGGACCAAATTGGAGCGAATGTTCACAATGCTGCTACGTATAACCGGAATTTTGTGAAGAAAGTGACGAAAAAACCGACGGTTGGGACTCCGGCTCGACCGGGTTGGAGTCTTCCATCGTTTATATTTGCGTTGTTTAACGAGAATTTAAAACCAGGATTAGGCACAGAACGTCATTTTGGGTTATTGTATCCGAATGGATCTGGAATTTACGAAATTGACCTTTCTGGAAAGACGCCGGAGTCAGAATTTCCAGCGCTGCCGCCRGCGGAGGATTACAAAGGGAAGGCGTGGTGTGTGGTGGCGGAGGGAGCGAACGTGAWCTTAGTAGCGGCGGCGCTATCATACGCTTGCTCCCAAGGGAACGGAACCTGTGATCCGATCCAACGTGGACAATTATGTTTTGAACCGAACAGTGTAGTTGGGCATGCTAACTATGCGTTTAGTTCTTATTGGGCACAGTTCAGGTCTATTGGTGGAACTTGTSATTTCAAYGGTTTAGCTGAAGCTACCTCAAAGGATCCAAGTAAGCTTTTCATTTCATTCATTGTTTATTTTCTCCAAATTTTATCTCTTCTTGAAAGGAAATTAATTTGGTAA 1425 0.4456 MATIITVSLLIISLSFFSISSAKISGQPGINYGQLGNNLPPPKTSINLIKSLKAKRVKIYDTNPLILKSLENTNLQVSIMVPNELVSKISTNQTLSDQWVQSNVAPFYHKTLIRYLLVGNELISSTSPDTWHHIVPAMQRIKTSLTTFRLHKVKVGTPCAXDVLESSFPPSNGTFRNDIAFRVMKPMLKXLSKTKSFFFLDVYPFFAWSSDPKNIDLNYALFESKNITVTDSGTGLVYHNLFDQMVDAVYFAMNRIGYPDIRIFIAETGWPNGGNLDQIGANVHNAATYNRNFVKKVTKKPTVGTPARPGWSLPSFIFALFNENLKPGLGTERHFGLLYPNGSGIYEIDLSGKTPESEFPALPPAEDYKGKAWCVVAEGANVXLVAAALSYACSQGNGTCDPIQRGQLCFEPNSVVGHANYAFSSYWAQFRSIGGTCXFNGLAEATSKDPSKLFISFIVYFLQILSLLERKLIW* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0858 474 SMART X8_cls 372 457 IPR012946 -
Amo19g0858 474 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 18 458 IPR044965 GO:0004553|GO:0005975
Amo19g0858 474 PANTHER BNAC03G35190D PROTEIN 18 458 - -
Amo19g0858 474 Gene3D Glycosidases 28 357 - -
Amo19g0858 474 Pfam Glycosyl hydrolases family 17 29 349 IPR000490 GO:0004553|GO:0005975
Amo19g0858 474 ProSitePatterns Glycosyl hydrolases family 17 signature. 261 274 IPR000490 GO:0004553|GO:0005975
Amo19g0858 474 Gene3D - 368 456 - -
Amo19g0858 474 SUPERFAMILY (Trans)glycosidases 29 349 IPR017853 -
Amo19g0858 474 Pfam X8 domain 373 443 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0858 Amo-Chr19 13978492 13980216 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0858 24 457 Glycoside Hydrolase AT3G23770 53.409 3.33e-167 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0858 - - ccaj:109805358 682.945