Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g2138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g02475 . . . . . . Spst9g02540 . . . . . . . Vimu10g00746 . . Vra5g0380
Pvu9g2139 . . . . . . . . . . Amo03g2258 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g2140 . . . Aed10g1296 . . . . . . . Apr1g2572 . . . . Car01g01589 . . . . . . . . . . . . . . . . . . . . . . . Mepo6g02337 Mesa5g02211 . Mtr2g2043 . Phco7g02476 . . . . . . Spst9g02434 . . . Trre11g02380 . . . Vimu10g00745 . Vivi4g01662 Vra5g0381
Pvu9g2141 . . . . . . . . . . . . . . . . . . . . . . Gma04g01476 . Gso4g1284 . . . . . . . . . . . . . . . . . . . . Phco7g02478 . . . . . . Spst9g02586 . . . . . . . Vimu10g00744 . . Vra5g0382
Pvu9g2142 . . . . . . . . . . . Apr1g2571 . . . . . Cca03g00798 . . . . . . . . . . . . . . Lapu9g00232 . . . . . Lja6g1828 . . . . . . Phco7g02479 . Psa1g2793 Pste2g00905 . . . . . . . . . . . Vimu10g00742 . . Vra5g0384
Pvu9g2143 . . . Aed4g1158 . . . . . . . Apr1g2570 . . . . . . . . . . . . . . . . . . . . Lapu9g00233 . . . . . Lja6g1829 . . . . . . Phco7g02480 . Psa1g2790 Pste2g00907 . . . . Ssu1g1815 . . . . . . Vimu10g00740 . . Vra5g0385
Pvu9g2144 . . . Aed4g1155 . . . . . . . Apr1g2567 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g02482 . . Pste2g00908 . . . . . . . . . . . . . . Vra5g0386
Pvu9g2145 Acco13g1022 Accr12g00996 . Aed4g1154 . . Ahy3g1665 . Alju13g1137 . . . . Bach2g01719 Bisa02g0350 Bva06g00875 . . Dere14g0113 . Enph5g0815 Glsi13g0837 Gma15g01941 . Gso15g1703 . Lal17g1368 . . Lan15g0268 . . Lapu9g00654 Lasa1g04349 . . . . Lja6g1830 . . . Mibi13g0986 . Phac9g03469 Phco7g02483 Prci9g1148 Psa1g0531 Pste2g00909 . . . . Ssu1g1806 Sto12g1203 . . Tsu08g02140 . . Vimu10g00737 . . Vra5g0387
Pvu9g2146 . . . Aed4g1153 . . . . . . . Apr1g2566 . . . . . . . Dod03g1773 . . Gma15g01938 . Gso15g1701 . Lal17g1369 . . Lan15g0267 . . Lapu9g00235 Lasa1g04350 . . . . Lja6g1831 . . . . . Phac9g03471 Phco7g02484 . Psa1g0530 Pste2g00910 . . . . Ssu1g1805 . . . Tsu08g02141 . . Vimu10g00736 . . Vra5g0388
Pvu9g2147 . . . Aed4g1152 . . . . . . . . . . . . . . . . . . . Gma09g00912 Gso15g1698 Gso9g0809 . . . . . . . . . . . . . . . . . . . Phco7g02485 . . Pste2g00911 . . . . . . Tpr3g2896 . . . . Vimu10g00735 . . Vra5g0389
   
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Select Species Gene Chromosome Start End Strand
Acco Acco13g1022 Chr13 8282590 8289360 -
Accr Accr12g00996 Chr12 10471448 10475935 -
Alju Alju13g1137 Chr13 30148814 30153049 +
Bisa Bisa02g0350 Chr02 6016990 6037323 +
Dere Dere14g0113 Chr14 1258606 1262783 +
Enph Enph5g0815 Chr5 6695152 6699491 -
Glsi Glsi13g0837 Chr13 26927001 26931160 +
Lasa Lasa1g04349 Chr1 728069991 728074115 +
Mibi Mibi13g0986 Chr13 12548515 12554523 -
Phac Phac9g03469 Chr9 34018762 34024796 +
Prci Prci9g1148 Chr9 25628908 25634168 +
Psa Psa1g0531 Chr1 32269605 32275115 -
Ssu Ssu1g1806 Chr1 45188615 45196430 -
Sto Sto12g1203 Chr12 7654547 7659220 -
Apr Apr1g2572 Chr1 35200006 35201902 +
Pvu Pvu9g2138 Chr9 30672689 30675626 -
Phco Phco7g02475 Chr7 43510493 43512800 -
Spst Spst9g02540 Chr9 59299743 59302815 -
Vimu Vimu10g00746 Chr10 6491387 6494109 +
Vra Vra5g0380 Chr5 3933644 3936469 -
Pvu Pvu9g2139 Chr9 30688132 30690596 -
Amo Amo03g2258 Chr03 92695682 92704762 +
Pvu Pvu9g2140 Chr9 30695698 30699063 -
Aed Aed10g1296 Chr10 14028215 14029701 +
Apr Apr1g2572 Chr1 35200006 35201902 +
Car Car01g01589 Chr01 33685376 33687322 -
Mepo Mepo6g02337 Chr6 31583070 31584657 -
Mesa Mesa5g02211 Chr5 36143458 36144907 +
Mtr Mtr2g2043 Chr2 30118856 30120514 -
Phco Phco7g02476 Chr7 43521814 43524195 -
Spst Spst9g02434 Chr9 57609202 57610418 -
Trre Trre11g02380 Chr11 28355181 28356544 +
Vimu Vimu10g00745 Chr10 6481180 6482620 +
Vivi Vivi4g01662 Chr4 69800421 69801365 -
Vra Vra5g0381 Chr5 3941668 3943501 -
Pvu Pvu9g2141 Chr9 30703654 30709565 +
Gma Gma04g01476 Chr04 37318705 37325516 +
Gso Gso4g1284 Chr4 34284237 34291587 +
Phco Phco7g02478 Chr7 43562127 43567600 +
Spst Spst9g02586 Chr9 59818513 59821625 +
Vimu Vimu10g00744 Chr10 6451977 6457509 -
Vra Vra5g0382 Chr5 3949492 3955914 +
Pvu Pvu9g2142 Chr9 30714654 30716282 +
Apr Apr1g2571 Chr1 35192071 35195187 -
Cca Cca03g00798 Chr03 17744350 17747564 +
Lapu Lapu9g00232 Chr9 2278444 2279966 +
Lja Lja6g1828 Chr6 45600675 45603752 -
Phco Phco7g02479 Chr7 43575457 43579048 +
Psa Psa1g2793 Chr1 241170740 241172047 -
Pste Pste2g00905 Chr2 9697877 9704581 -
Vimu Vimu10g00742 Chr10 6434307 6436442 -
Vra Vra5g0384 Chr5 3971520 3974023 +
Pvu Pvu9g2143 Chr9 30725573 30728031 +
Aed Aed4g1158 Chr4 11106547 11110454 +
Apr Apr1g2570 Chr1 35185805 35188540 -
Lapu Lapu9g00233 Chr9 2282815 2284591 +
Lja Lja6g1829 Chr6 45606356 45609433 -
Phco Phco7g02480 Chr7 43590909 43592896 +
Psa Psa1g2790 Chr1 241042798 241044284 +
Pste Pste2g00907 Chr2 9721720 9725942 -
Ssu Ssu1g1815 Chr1 45376019 45393130 +
Vimu Vimu10g00740 Chr10 6421806 6424092 -
Vra Vra5g0385 Chr5 3986627 3988208 +
Pvu Pvu9g2144 Chr9 30731789 30732397 +
Aed Aed4g1155 Chr4 11079600 11080870 -
Apr Apr1g2567 Chr1 35174430 35174991 -
Phco Phco7g02482 Chr7 43605018 43605495 +
Pste Pste2g00908 Chr2 9736939 9737492 +
Vra Vra5g0386 Chr5 3989321 3990022 +
Pvu Pvu9g2145 Chr9 30736980 30743308 +
Acco Acco13g1022 Chr13 8282590 8289360 -
Accr Accr12g00996 Chr12 10471448 10475935 -
Aed Aed4g1154 Chr4 11058307 11067025 -
Ahy Ahy3g1665 Chr3 31581188 31586364 +
Alju Alju13g1137 Chr13 30148814 30153049 +
Bach Bach2g01719 Chr2 25652358 25656554 +
Bisa Bisa02g0350 Chr02 6016990 6037323 +
Bva Bva06g00875 Chr06 7635684 7640379 +
Dere Dere14g0113 Chr14 1258606 1262783 +
Enph Enph5g0815 Chr5 6695152 6699491 -
Glsi Glsi13g0837 Chr13 26927001 26931160 +
Gma Gma15g01941 Chr15 28262700 28269277 -
Gso Gso15g1703 Chr15 28032077 28039055 -
Lal Lal17g1368 Chr17 15024889 15029949 +
Lan Lan15g0268 Chr15 3073171 3078203 -
Lapu Lapu9g00654 Chr9 7789358 7795805 +
Lasa Lasa1g04349 Chr1 728069991 728074115 +
Lja Lja6g1830 Chr6 45647054 45652485 +
Mibi Mibi13g0986 Chr13 12548515 12554523 -
Phac Phac9g03469 Chr9 34018762 34024796 +
Phco Phco7g02483 Chr7 43609982 43614231 +
Prci Prci9g1148 Chr9 25628908 25634168 +
Psa Psa1g0531 Chr1 32269605 32275115 -
Pste Pste2g00909 Chr2 9749296 9759768 +
Ssu Ssu1g1806 Chr1 45188615 45196430 -
Sto Sto12g1203 Chr12 7654547 7659220 -
Tsu Tsu08g02140 Chr08 28976781 28981507 +
Vimu Vimu10g00737 Chr10 6407373 6411227 -
Vra Vra5g0387 Chr5 3992794 3996773 +
Pvu Pvu9g2146 Chr9 30754860 30762801 -
Aed Aed4g1153 Chr4 11035012 11039215 +
Apr Apr1g2566 Chr1 35163284 35164666 +
Dod Dod03g1773 Chr03 26508152 26511825 -
Gma Gma15g01938 Chr15 28199580 28203505 +
Gso Gso15g1701 Chr15 27961403 27965143 +
Lal Lal17g1369 Chr17 15030424 15035405 -
Lan Lan15g0267 Chr15 3068981 3072361 +
Lapu Lapu9g00235 Chr9 2296125 2299700 -
Lasa Lasa1g04350 Chr1 728075085 728084386 -
Lja Lja6g1831 Chr6 45653940 45656596 -
Phac Phac9g03471 Chr9 34030113 34037808 -
Phco Phco7g02484 Chr7 43617595 43624265 -
Psa Psa1g0530 Chr1 32264574 32269512 +
Pste Pste2g00910 Chr2 9766205 9770393 -
Ssu Ssu1g1805 Chr1 45157043 45160175 +
Tsu Tsu08g02141 Chr08 28982138 28986684 -
Vimu Vimu10g00736 Chr10 6401276 6404507 +
Vra Vra5g0388 Chr5 3999318 4003631 -
Pvu Pvu9g2147 Chr9 30810418 30815316 +
Aed Aed4g1152 Chr4 11029054 11031047 -
Gma Gma09g00912 Chr09 15087843 15097649 +
Gso Gso15g1698 Chr15 27789077 27793288 -
Gso Gso9g0809 Chr9 14844695 14850149 +
Phco Phco7g02485 Chr7 43637834 43642115 +
Pste Pste2g00911 Chr2 9780986 9788039 +
Tpr Tpr3g2896 Chr3 30601283 30606807 +
Vimu Vimu10g00735 Chr10 6346786 6347619 -
Vra Vra5g0389 Chr5 4023384 4026971 +
Aed Aed4g1152 Chr4 11029054 11031047 -