Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02540 ATGTGCCTAGTATTCAGTTCAGTTGGGTTGGTTTGGACTATTATGAGAAAGAGAGTGTATGTGTATGTAGGCGGATTTTCGGCTGCTCCCATTCTTATTCTGCCTGTGAACTCGCCTTCCGTACTCCTCATGCCTACACTTGTGGATTACAGTGGTGACGATGAGATTCCTGGAGCCTCCTTTTGTCAAAATCCCATTGATTTGGGTCGCATGTGTACTTTGCGTTCAAGTGTGGATCGATACTACTGCACGCCTAACAAGAGAGCTCGCATCAATGCCCCGGATGTGTTGGAAATTCTGCGGCTCGAGAAAGATCAAAAGCCTACCATTGAAGTCCTTCCTGATGAATGTCTTTTTGAGATTTTCAGACGGCTCTGCAGTGCCAAAGACAGAAGCTCTTGTTCCAGTGTGTCTAAGCGGTGGCTCATGCTTATGAGCCGTATCTGCAAAGCTGAAATTTACAAGTCTGAGAATATGATTAAGGGGTGTCCTTCGTGTGATGTTGACGATGATGGCTACTTAACGCGGTGTTTAGAAGGGAAGAAGGCAACTGATGTGAGGGTTGCTGCAATTGCAGTTGGGACTAGTGCCCGTGGGGGACTGGGAAAACTTTCTATCAGTGGAAGCAATGCCGTTGGCGGTGTAACAGATGTTGGTCTCTCAGTAGTTGCTCATGGTTGCCGATCTCTTAGATCATTTTCTTTGTGGAATGTTTCCTCTGTCGGGGATGAGGGGCTTGCCGAGATAGCGAAAGGATGCCATATGTTGGAGAAGCTTGACATCTGCCAGGCTTCCTCCATTAGCAACAAAAGTCTAATCGCGATAGCTAAGGGCTGTCCCAATTTGACCACTTTAAATATTGAATCCTGTCCAGAGATTGGAAACGAGGGGTTGCAAGCTATTGCAAGGTCTTGCCCCAAGTTAAAGTGCATCTCTATCAAGGATTGTCCTCTTGTTGGGGATCATGGAGTGTCAAGTCTATTATCATCAGCTAATAACCTTTCAAGGGTAAAGCTTCAGGATTTAAACATCACAGATTTCTCTCTGGCTGTCATTGGCCATTATGGAAAGGCAATTTTAAATTTGGTCCTCTCTGGTCTTCAAAATGTCAGTGAAAGGGGATTTTGGGTCATGGGTGTTGCTCAAGGTCTGAAGAAACTTACGTCACTTACAGTTTCATCATGCCGAGGGGTAACAGATGCAAGCATTGAAGCCATGGGTAAAGGTTGCATCCACCTAAAGAATATGTCTCTGCGCAGGTGCTGTTTTGTGTCTGATAATGGATTGGTAGCATTTAGCAAAGCTGCAAATTCGCTTGAGAGCTTACAGTTGGAGGAGTGTAACAGCATCACCCAGTTTGGGATTATTGGTGCCCTTTCAAACTTCAAAACAACATTGAAATCTCTCAACCTTCTCAAGTGTAAGGGAGTTAAAGATATTGATGTGGATGTATCTATGCTTTCTCCTTGCGAGTCTCTCCGACATTTATCCATTCGTAACTGCCCTGGTGTTGGAAATCCTAGCCTGGCTATGGTTGGGAAATTGTGTCCCCAACTTCAGCATGTTGATCTGACTGGACTTTATGGTGTCACAGACGCTGGCCTTCTTCCTCTTCTGCAGAATTCTGAGACTGGGTTGGTCAAGGTGAACCTTTCTGGCTGCTGGAATTTCTCAGACAACACCGTTTCAGAATTGGCCAGGCTACATGGTGGAACCCTTGAATTGCTAAACCTTGATGGATGCAGGAAGATTACCGATGCAAGCTTGGTTGCAATTGCACATAACTGCCTTCTGCTTAATGATCTAGACGTATCAAAGTGTGCAATCACTGATGCCGGAATAGCTGTTCTTTCTAATGCTAGGCAGCTTACTTTGCAAGTGCTTTCTTTGTCAAACTGCTCTGGTGTAACAAGCAAGAGTGAACCTTCCCTAACAAATTTGGGCCAAACATTGGTTGGGTTGAATCTTCAAAATTGTAATTCAATTGGCTGCAACACAGTTGAGTTGCTAGTGGAGAACCTGTGGAGATGCGGTGACATTCTGCATGCGTTTTATGCAGATGTACCTACCTATCAAGGGTGGATTGGATGGCAGTTTGTTGACATAGTTGTTTTCCGGGGAACTTTGGTAGATCCTTTCTTCAGCATTTTTTTTATAAACAAATGCTTGTTCAACCCTTTTGGCCTTGCTACTACAAGAGGCCACTCCCTTTATGCTATGATGCCCTGGGAATACGTTTACTATGTCCTCGCTGGTTGA 2259 0.448 MCLVFSSVGLVWTIMRKRVYVYVGGFSAAPILILPVNSPSVLLMPTLVDYSGDDEIPGASFCQNPIDLGRMCTLRSSVDRYYCTPNKRARINAPDVLEILRLEKDQKPTIEVLPDECLFEIFRRLCSAKDRSSCSSVSKRWLMLMSRICKAEIYKSENMIKGCPSCDVDDDGYLTRCLEGKKATDVRVAAIAVGTSARGGLGKLSISGSNAVGGVTDVGLSVVAHGCRSLRSFSLWNVSSVGDEGLAEIAKGCHMLEKLDICQASSISNKSLIAIAKGCPNLTTLNIESCPEIGNEGLQAIARSCPKLKCISIKDCPLVGDHGVSSLLSSANNLSRVKLQDLNITDFSLAVIGHYGKAILNLVLSGLQNVSERGFWVMGVAQGLKKLTSLTVSSCRGVTDASIEAMGKGCIHLKNMSLRRCCFVSDNGLVAFSKAANSLESLQLEECNSITQFGIIGALSNFKTTLKSLNLLKCKGVKDIDVDVSMLSPCESLRHLSIRNCPGVGNPSLAMVGKLCPQLQHVDLTGLYGVTDAGLLPLLQNSETGLVKVNLSGCWNFSDNTVSELARLHGGTLELLNLDGCRKITDASLVAIAHNCLLLNDLDVSKCAITDAGIAVLSNARQLTLQVLSLSNCSGVTSKSEPSLTNLGQTLVGLNLQNCNSIGCNTVELLVENLWRCGDILHAFYADVPTYQGWIGWQFVDIVVFRGTLVDPFFSIFFINKCLFNPFGLATTRGHSLYAMMPWEYVYYVLAG 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02540 752 Pfam Leucine Rich repeat 279 302 IPR001611 GO:0005515
Spst9g02540 752 Pfam Leucine Rich repeat 597 617 IPR001611 GO:0005515
Spst9g02540 752 Pfam F-box-like 111 142 IPR001810 GO:0005515
Spst9g02540 752 FunFam EIN3-binding F-box protein 1 109 146 - -
Spst9g02540 752 Gene3D Ribonuclease Inhibitor 376 481 IPR032675 -
Spst9g02540 752 SUPERFAMILY RNI-like 214 457 - -
Spst9g02540 752 SMART fbox_2 113 154 IPR001810 GO:0005515
Spst9g02540 752 FunFam EIN3-binding F-box protein 1 292 481 - -
Spst9g02540 752 SUPERFAMILY F-box domain 105 147 IPR036047 GO:0005515
Spst9g02540 752 FunFam EIN3-binding F-box protein 1 484 682 - -
Spst9g02540 752 CDD F-box_AtTIR1-like 110 144 - -
Spst9g02540 752 Gene3D - 110 147 - -
Spst9g02540 752 Gene3D Ribonuclease Inhibitor 175 375 IPR032675 -
Spst9g02540 752 Gene3D Ribonuclease Inhibitor 482 684 IPR032675 -
Spst9g02540 752 PANTHER UNCHARACTERIZED 333 479 - -
Spst9g02540 752 SMART LRR_CC_2 516 541 IPR006553 -
Spst9g02540 752 SMART LRR_CC_2 570 595 IPR006553 -
Spst9g02540 752 SMART LRR_CC_2 543 568 IPR006553 -
Spst9g02540 752 SMART LRR_CC_2 490 515 IPR006553 -
Spst9g02540 752 SMART LRR_CC_2 305 330 IPR006553 -
Spst9g02540 752 SMART LRR_CC_2 410 435 IPR006553 -
Spst9g02540 752 SMART LRR_CC_2 279 304 IPR006553 -
Spst9g02540 752 SMART LRR_CC_2 436 461 IPR006553 -
Spst9g02540 752 SMART LRR_CC_2 596 620 IPR006553 -
Spst9g02540 752 SMART LRR_CC_2 253 278 IPR006553 -
Spst9g02540 752 SMART LRR_CC_2 384 409 IPR006553 -
Spst9g02540 752 SMART LRR_CC_2 648 673 IPR006553 -
Spst9g02540 752 SMART LRR_CC_2 227 252 IPR006553 -
Spst9g02540 752 SUPERFAMILY RNI-like 379 640 - -
Spst9g02540 752 FunFam EIN3-binding F-box protein 1 173 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02540 Spst-Chr9 59299743 59302815 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02540 K14515 - gmx:100792339 1061.21