Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02483 ATGGCCTCTGACATCTCGTTTGAGGACCTGAAGAAGGAGAATATTGATCTTGCAAAGACTCCCGTTGAAGAGGTCTTTGAGAAGCTAAAATGTAGCAGACAGGGTCTAACATCCTCAGAAGGAGAGAAGAGGCTCCAGATTTTTGGCTACAACAAATTAGAAGAGAAAAATGAGTCCAAGCTCCTAAAGTTCTTGGGTTTCATGTGGAATCCTCTATCATGGGTTATGGAGTGTGCAGCTATCATGGCCATTGTATTGGCCAATGGAGGGGGCAAGCCACCGGATTGGCAAGATTTCACTGGTATTGTAGTGTTGCTTATCGTCAACTCAACCATCAGTTTCATTGAGGAAAACAATGCAGGCAATGCTGCAGCTGCTTTGATGGCTGGTCTTGCACCCAAAACCAAGGTGTTGAGGGATGGAAAATGGGGAGAAGAAGAGGCATCAATTTTGGTACCTGGAGATGTGATTAGCATCAAGTTAGGAGATATTGTCCCTGCTGATGCCCGTCTCTTGGAAGGAGATCCTCTCAAAATTGACCAAGCTGCTCTCACTGGTGAATCCTTGCCAGTCACAAGGAACCCTGGTGATGAAGTCTTCTCTGGCTCAACCTGCAAACAAGGTGAAATTGAGGCTGTTGTCTTTGCCACTGGTGTTAACACCTTCTTTGGCAAGGCTGCTCATCTTGTAGACAGCACCAACAATGTTGGTCACTTTCAACAGGTGTTGACATCTATTGGTAACTTTTGTATCTGCTCAATTGCTGTGGGCATGGTGATAGAGATCATTGTCATGTACCCCATCCAGCATAGGTCTTATAGAGATGGCATTGACAACTTATTGGTGCTTCTCATTGGTGGTATCCCAATTGCTATGCCTACTGTCTTGTCTGTGACCATGGCTATTGGGTCTCACCGTTTGTCCCAACAAGGAGCCATTACCAAGAGAATGACAGCCATTGAAGAAATGGCAGGGATGGATGTTCTCTGCAGTGACAAAACTGGAACTCTCACCCTTAATAAGCTTAGTGTGGACAAGAACTTGATTGAGGTGTTCCCCAGGGGCATGGACAGGGACACCCTTGTCTTATTTTCAGCCAGGGCTTCCAGGACTGAAAACCAGGATGCCATTGATGCATCAATTGTGGGAATGTTAAGTGACCCTAAGGAGGCAAGAGCAGGAATCACCGAGGTGCATTTCTTGCCTTTTAATCCTGTGGACAAGCGCACTGCTATTACCTTCATTGACAGCAATGGTGACTGGTACAGAAGCAGCAAAGGTGCTCCTGAGCAAATCATTGAACTTTGTGGCCTTAAAGGAGAGACCCTGAAAAAGGCACACAAGGTTATTGATGAATATGCTGACCGCGGTCTGCGTTCTTTGGGTGTTGCTCGCCAGACTGTTTCAGAGAAGACGAAGGAGAGTGCTGGAGATCCATGGGAGTTTTTGGGTCTTCTACCTCTCTTTGATCCTCCAAGGCATGATAGTGCAGAGACCATTCGTCGTGCTCTTGAACTTGGAGTCAATGTTAAAATGATCACTGGTGACCAACTTGCCATTGGCAAAGAAACCGGTCGCAGACTTGGAATGGGCACCAACATGTACCCTTCATCCTCCCTCCTTGGTGATTCCACGGATGGAGCCCTTTCTTCAATCTCAGTTGATGAACTCATTGAGAAGGCTGACGGATTTGCCGGAGTCTTCCCTGAGCACAAGTATGAGATTGTGAAGAGGTTGCAGGATAGAAAGCACATCTGTGGAATGACTGGAGATGGTGTGAACGATGCACCAGCACTGAAGAAGGCAGACATTGGCATTGCAGTGGATGATGCAACTGACGCCGCAAGGAGTGCCTCTGATATTGTTTTGACCCAGCCTGGACTCAGTGTGATTGTGAGTGCTGTGTTGACAAGCAGGGCCATTTTCCAGAGGATGAAGAACTATACAATCTATGCTGTTTCCATCACAGTCCGTATAGTGTTTGGCTTCTTGCTTGTTGCTTTAATATGGAAGTTCGACTTCTCTCCCTTCATGGTTCTCATCATTGCTATCTTGAACGATGGAACGATCATGACCATATCAAAAGACAGGGTGAAACCATCTCCTTTGCCTGATTCATGGAAACTCAACGAAATCTTTGCCACTGGAGTGGTTCTTGGAGCATACATGGCCATCATGACCGCAGTCTTCTTTTACCTTGTTCACGACACAAATTTTTTCTCTAAAGTGTTTGGTGTGAGACCAATTGCAGAAAGTGAGGAGCAGCTTAACTCTGCTCTCTACCTTCAAGTGAGTATCATTAGTCAGGCACTGATCTTCGTGACCAGGTCAAGGAGCTGGTCATATTTTGAACGCCCTGGCACCATGCTCCTTGTTGCCTTCCTTTGTGCCCAGCTGGTGGCCTCTGTGATTGCTGTGTATGCACATTGGGACTTTGCCAGAATCCATGGAGTGGGGTGGGAATGGGCTGGAGCAATATGGATCTACAGTATTATTACATACATCCCTCTTGACATCCTCAAATTTCTCATCCGCATTGCAGGCACTGCTTCCCAAAACCAGGCTTAG 2568 0.4657 MASDISFEDLKKENIDLAKTPVEEVFEKLKCSRQGLTSSEGEKRLQIFGYNKLEEKNESKLLKFLGFMWNPLSWVMECAAIMAIVLANGGGKPPDWQDFTGIVVLLIVNSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWGEEEASILVPGDVISIKLGDIVPADARLLEGDPLKIDQAALTGESLPVTRNPGDEVFSGSTCKQGEIEAVVFATGVNTFFGKAAHLVDSTNNVGHFQQVLTSIGNFCICSIAVGMVIEIIVMYPIQHRSYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFPRGMDRDTLVLFSARASRTENQDAIDASIVGMLSDPKEARAGITEVHFLPFNPVDKRTAITFIDSNGDWYRSSKGAPEQIIELCGLKGETLKKAHKVIDEYADRGLRSLGVARQTVSEKTKESAGDPWEFLGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGDSTDGALSSISVDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVDDATDAARSASDIVLTQPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITVRIVFGFLLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLNEIFATGVVLGAYMAIMTAVFFYLVHDTNFFSKVFGVRPIAESEEQLNSALYLQVSIISQALIFVTRSRSWSYFERPGTMLLVAFLCAQLVASVIAVYAHWDFARIHGVGWEWAGAIWIYSIITYIPLDILKFLIRIAGTASQNQA 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02483 855 Gene3D - 133 217 - -
Phco7g02483 855 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 846 IPR023298 -
Phco7g02483 855 Pfam haloacid dehalogenase-like hydrolase 326 603 - -
Phco7g02483 855 FunFam Plasma membrane ATPase 133 217 - -
Phco7g02483 855 SFLD p-type atpase 312 641 IPR044492 -
Phco7g02483 855 CDD P-type_ATPase_H 35 842 IPR006534 GO:0008553|GO:0016020|GO:0120029
Phco7g02483 855 Gene3D - 327 626 IPR023214 -
Phco7g02483 855 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
Phco7g02483 855 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Phco7g02483 855 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Phco7g02483 855 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Phco7g02483 855 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Phco7g02483 855 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Phco7g02483 855 Gene3D - 95 816 - -
Phco7g02483 855 FunFam Plasma membrane ATPase 483 637 - -
Phco7g02483 855 SUPERFAMILY HAD-like 326 636 IPR036412 -
Phco7g02483 855 Pfam E1-E2 ATPase 132 309 - -
Phco7g02483 855 NCBIfam HAD-IC family P-type ATPase 564 675 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco7g02483 855 NCBIfam HAD-IC family P-type ATPase 102 347 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco7g02483 855 NCBIfam plasma-membrane proton-efflux P-type ATPase 35 807 IPR006534 GO:0008553|GO:0016020|GO:0120029
Phco7g02483 855 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Phco7g02483 855 SFLD C1.7: P-type atpase like 312 641 - -
Phco7g02483 855 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Phco7g02483 855 Gene3D - 342 489 IPR023299 GO:0000166
Phco7g02483 855 PANTHER CALCIUM-TRANSPORTING ATPASE 22 847 - -
Phco7g02483 855 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Phco7g02483 855 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco7g02483 855 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco7g02483 855 PRINTS H+-transporting ATPase (proton pump) signature 761 782 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco7g02483 855 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco7g02483 855 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco7g02483 855 FunFam ATPase 4 plasma membrane-type 575 816 - -
Phco7g02483 855 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Phco7g02483 855 FunFam Plasma membrane ATPase 342 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02483 Phco-Chr7 43609982 43614231 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02483 7 43609982 43614231 Phco7g02483 7 43609982 43614231 ECH