Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02475 ATGCCTGCCCTTGTCAATTATAGTGGTGATGATGAACTCTACCCTGGAGCTTCCTTTTGTCAAAATCTCATCGATTTGGGTCGCATGTGTACTTTGGGTTCAAGTGTGGAAGGGTACTACTGCACCCCTAACAAACGAGCTCGCATCAGTGCCCCGGATATTTTTGAAACTCTACGGCTCAGGAAAGATCCAAAGCCTACCATTGAAGTCCTTCCTAATGAATGTCTTTTTGAGATTTTCAGACGTCTCTCTAGTGGCAAAGAGAGGAGCACCTGTTCCTGTGTATCTAAGCGGTGGCTCATGCTTATGAGCAGGATCTGCAAAGCTGAAATTCACAAGTCCGAGAATTTGACTGAGGGATCTGCTTCCTGTGATGTTGAAATGGCCTCAGTGGATGAGGATCTAGTTATTGAAGATGATGGTTACTTATCGCGGTGTTTAGAAGGGAAGAAGGCAACTGATGTGAGGCTTGCTGCAATTGCAGTTGGGACTAGTGCCCGTGGAGGACTGGGAAAACTATCTATTAGAGGAAGCAATTCTGCTCGCGGTGTCACAGATGTTGGTCTCTCAGCAGTTGCTCATGGTTGCCCTTCTCTTAGATCTTTTTCTTTGTGGAATGTTTCTTCTGTCGGGGATGAGGGTCTGTCCGAGATAGCAAAAGGATGCCATATGTTGGAGAAGCTTGACATCTGCCATGCTTCCTCCATTAGCAACAAAAGTCTAATTGCAATAGCTAAGGGCTGCCCCAATTTGACCACCTTAAATATTGAATCGTGTCCAGAGATTGGAAACGAGGGGTTGCAAGCTATTGCAAGGTCTTGCCCCAAGTTAAAGTGCATCTCTATCAAGGATTGTCCTCTTGTTGGGGATCATGGAGTATCAAGTTTATTATCATCAGCTAGTAACCTTTCAAGGTTAAAGCTTCAGGATTTAAACATTACAGATTTCTCTCTGGCTGTCATTGGCCATTACGGAAAGGCAATTGTAAATTTAGTGCTCTCTAGTCTTCAAAATGTCAGTGAAAGGGGGTTTTGGGTCATGGGTGTTGCTCAAGGTCTGCAGAAGCTCATGTCACTTACAGTTTCTTCATGTCGAGGGGTAACAGATGCAAGCATTGAAGCCATAGGTAAAGGCTGCATCCACCTGAAGCAGACGTTTCTGCGAAGGTGCTGTTTAGTGTCTGATAATGGCTTGGTTGCATTTAGCAAAGCTGTAAGGTCTCTTGAGAGCCTGCAATTGGAGGAGTGTAACAGCATCACCCAGTTTGGGATTATCGGTGCCCTTTCAAACTTCAAAACAACATTGAAGTATCTCACCCTTATTAAGTGTAAAGGAGTTAAAGATATAGATGCAGAAGTATCAATGCTTTCTCCTTGTGAGTCCCTCCAACATTTATCCATTCGTAACTGCCCTGGTGTTGGAAATGCTAGCCTGACTATGGTTGGCAAATTATGTCCCCAACTTCAGCACGTTGATCTGACTGGACTTTATGGTGTAACTGATGCTGGCCTTCTTCCTCTTTTAGAGAATTCTGAGTCTGGGCTGGTCAAGGTGAACCTTGCTGGCTGCGGGAATTTGTCAGACAACGTAGTTTCAGAATTGGCCCGGCTACACGGTGGAACCCTTGAGTTGCTAAATCTTGATGGATGCAGGAAGATTACCGATGCAAGCTTGGTTGCAATTGCAGATAACTGCCATCTGCTTAAAGATCTAGACGTGTCAAAGTGTGCAATCACCGATGCTGGAATAGCTGTTCTTTCTAATGCCAGGCAGCTCACTTTGCAAGTGCTTTCTTTGTCAAACTGTTCTGGCGTAACTTGCAAAAGTGGACCTTCCCTAACAAATTTAGGCCAGACCTTGGTTGGTTTGAATCTTCAAAATTGCAATTCAATTGGCTGCAACACAGTTGAGTTGCTAGTGGAGAATTTGTGGAGATGTGACGTTCTGGCTTAA 1953 0.446 MPALVNYSGDDELYPGASFCQNLIDLGRMCTLGSSVEGYYCTPNKRARISAPDIFETLRLRKDPKPTIEVLPNECLFEIFRRLSSGKERSTCSCVSKRWLMLMSRICKAEIHKSENLTEGSASCDVEMASVDEDLVIEDDGYLSRCLEGKKATDVRLAAIAVGTSARGGLGKLSIRGSNSARGVTDVGLSAVAHGCPSLRSFSLWNVSSVGDEGLSEIAKGCHMLEKLDICHASSISNKSLIAIAKGCPNLTTLNIESCPEIGNEGLQAIARSCPKLKCISIKDCPLVGDHGVSSLLSSASNLSRLKLQDLNITDFSLAVIGHYGKAIVNLVLSSLQNVSERGFWVMGVAQGLQKLMSLTVSSCRGVTDASIEAIGKGCIHLKQTFLRRCCLVSDNGLVAFSKAVRSLESLQLEECNSITQFGIIGALSNFKTTLKYLTLIKCKGVKDIDAEVSMLSPCESLQHLSIRNCPGVGNASLTMVGKLCPQLQHVDLTGLYGVTDAGLLPLLENSESGLVKVNLAGCGNLSDNVVSELARLHGGTLELLNLDGCRKITDASLVAIADNCHLLKDLDVSKCAITDAGIAVLSNARQLTLQVLSLSNCSGVTCKSGPSLTNLGQTLVGLNLQNCNSIGCNTVELLVENLWRCDVLA 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02475 650 SMART fbox_2 71 112 IPR001810 GO:0005515
Phco7g02475 650 SUPERFAMILY RNI-like 182 383 - -
Phco7g02475 650 Pfam Leucine Rich repeat 248 271 IPR001611 GO:0005515
Phco7g02475 650 Pfam Leucine Rich repeat 565 586 IPR001611 GO:0005515
Phco7g02475 650 Gene3D Ribonuclease Inhibitor 260 451 IPR032675 -
Phco7g02475 650 Gene3D Ribonuclease Inhibitor 141 259 IPR032675 -
Phco7g02475 650 CDD F-box_AtTIR1-like 68 102 - -
Phco7g02475 650 SMART LRR_CC_2 485 510 IPR006553 -
Phco7g02475 650 SMART LRR_CC_2 379 404 IPR006553 -
Phco7g02475 650 SMART LRR_CC_2 459 484 IPR006553 -
Phco7g02475 650 SMART LRR_CC_2 248 273 IPR006553 -
Phco7g02475 650 SMART LRR_CC_2 565 589 IPR006553 -
Phco7g02475 650 SMART LRR_CC_2 274 299 IPR006553 -
Phco7g02475 650 SMART LRR_CC_2 617 642 IPR006553 -
Phco7g02475 650 SMART LRR_CC_2 353 378 IPR006553 -
Phco7g02475 650 SMART LRR_CC_2 512 537 IPR006553 -
Phco7g02475 650 SMART LRR_CC_2 539 564 IPR006553 -
Phco7g02475 650 SMART LRR_CC_2 222 247 IPR006553 -
Phco7g02475 650 SMART LRR_CC_2 405 430 IPR006553 -
Phco7g02475 650 SMART LRR_CC_2 196 221 IPR006553 -
Phco7g02475 650 SUPERFAMILY F-box domain 63 109 IPR036047 GO:0005515
Phco7g02475 650 Gene3D - 69 105 - -
Phco7g02475 650 Pfam F-box-like 69 100 IPR001810 GO:0005515
Phco7g02475 650 FunFam EIN3-binding F-box protein 1 142 260 - -
Phco7g02475 650 FunFam EIN3-binding F-box protein 1 67 104 - -
Phco7g02475 650 FunFam EIN3-binding F-box protein 1 261 450 - -
Phco7g02475 650 SUPERFAMILY RNI-like 379 632 - -
Phco7g02475 650 Gene3D Ribonuclease Inhibitor 452 510 IPR032675 -
Phco7g02475 650 FunFam EIN3-binding F-box protein 1 453 650 - -
Phco7g02475 650 Gene3D Ribonuclease Inhibitor 511 645 IPR032675 -
Phco7g02475 650 PANTHER UNCHARACTERIZED 459 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02475 Phco-Chr7 43510493 43512800 Transposed