Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0389 ATGATAAACGGCCAAGGTATATATAACACTTTTTCTGCTATTGTGCCACTATATGTGCCGATGATTCTAGCCTATGGCTCCGTCCAGTGGTGGAAGATCATCACGCCAGAACAATGCTCTGGCATAAACCGCTTCGTGGCATTTTTTGCCTCTCCTTTCCTTAACTTCTATTTTCTAGCTACCAACAATCCTTACACTATGAACTTGAGGTTCATAACCGCTGACACGCTTCAGAAATTGGTGATTCTGGGTGCTCTTTTCCTATGTTCTGTCTTCACGAAATTTGGCAGCATAGACTGGACCATCACCCTCTTCTCACTTACTACGCTGCCCAACACGGTGGTCATCGGTGTGCCGCTTCTAACAGCCATGTACGGAGACTCATCAGCCGTCCTCATGAGTCACATTTTCATCATGCAAGGTGTGGTGTGGTTCACTCTCATGTTGTTCTTGTACGAATACAGAGGTGCCAGAAGCCTTATTTCGATGCAGTTCCCTGATAACGGTGGCTCCATCGTCTCATTCACCATTGACTCTGATGTTCTCTCGCTTGGCGACAACGAGCCGCTGCATACTGAAGCGAAAATGAGAGAAAATGGAGAGATTCATGTGGCGGTGAAGAGTCCTTCCTTCAACAAGTCTGGTAACTGGTCAACGTCAAATCGTCGTGGAACACAGATTTTGTCCATGCAAAGATCTTTGAGTTTTAACACCATACGTGATCTTCGAGACCAGTGTTTTGAAAGAGGAATCTTCGAGATAGACGAAAAATTGTGGAAGGACACTATTCACAACCAAGTGAAACACGAGTCAATAGTGATGAAGAATGATATTGAAGCAATCAAAAATAAAAAGGTTGAAATCGAAAATCCAAAAGAGGTGAAAATCGAAGAAGGAGGTGTATATAATAAAAAGCAGGAAATGCCACGTACTAGTGTCATGACAAGGCTCATTCTCACCATGGTTTGGAGGAATCTAATTAGAAACCCTAATACCTACGCTTGTGCTCTTGGATTCATATGGTCTCTCATATCATTTAGGTGGAATATAAAGATTCCTCTGATAGTAGATGGTTCGATTTTAATATTGTCTAAAACAGGGACAGGAATGGCCATGTTCAGTATAGGTTTGTACATGGCATTACAACCCAAACTGGTGGCTTGTGGAAACACTTGGGCAATAGTATCAATGGTCGCCCGATTCGTCGTTGGTCCCGCAGTGATGGCTGTCGCAGCCATAGCCATTGGTATCCGAGGAGTTCTTTTACGTATTGCGATTATTCAAGCTGTTCTTCCCCAATCTATTATCACTTTTATATTTTCCAAACAGTACAATCTCCACACAGACATTATAAGCACTGCGGTTATATTTGGAACGATGATTTCGTTGCCCATTTCACTATTATACTTCGTGATACTTGGAATCGATTAA 1431 0.4256 MINGQGIYNTFSAIVPLYVPMILAYGSVQWWKIITPEQCSGINRFVAFFASPFLNFYFLATNNPYTMNLRFITADTLQKLVILGALFLCSVFTKFGSIDWTITLFSLTTLPNTVVIGVPLLTAMYGDSSAVLMSHIFIMQGVVWFTLMLFLYEYRGARSLISMQFPDNGGSIVSFTIDSDVLSLGDNEPLHTEAKMRENGEIHVAVKSPSFNKSGNWSTSNRRGTQILSMQRSLSFNTIRDLRDQCFERGIFEIDEKLWKDTIHNQVKHESIVMKNDIEAIKNKKVEIENPKEVKIEEGGVYNKKQEMPRTSVMTRLILTMVWRNLIRNPNTYACALGFIWSLISFRWNIKIPLIVDGSILILSKTGTGMAMFSIGLYMALQPKLVACGNTWAIVSMVARFVVGPAVMAVAAIAIGIRGVLLRIAIIQAVLPQSIITFIFSKQYNLHTDIISTAVIFGTMISLPISLLYFVILGID* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0389 476 TIGRFAM 2a69: auxin efflux carrier 1 474 IPR014024 -
Vra5g0389 476 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 1 231 IPR033526 GO:0010315|GO:0010329
Vra5g0389 476 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 266 475 IPR033526 GO:0010315|GO:0010329
Vra5g0389 476 Pfam Membrane transport protein 11 469 IPR004776 GO:0016021|GO:0055085
Vra5g0389 476 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 231 - -
Vra5g0389 476 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 266 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0389 Vra-Chr5 4023384 4026971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0389 276 466 Organic Solute Cotransporters AT1G73590 55.276 6.05e-63 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0389 K13947 - gmx:100781239 642.884