Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0380 ATGCCTACCCTTGTCAATTATAGTGGTGATGATGAACTCTATTCTGGAGCTTCCTTTTATCAAAAAAATCTCATTGATTTGGGTCGCGTGTGTACTTTGGGTTCAAGTGTGGATGGGTACTACTGCAGTCCTAGGAAACGAGCTCGCATCAGTGCCCCGGATATTTTTGAAACTCCACGGCTCAGGAAAGATCAAAAGCCTACGATTGAAGTTCTTCCTAATGAATGTCTTTTTGAGATTTTCAGACGGCTCTCTAGTGGCAAAGAGAGGAGCTCTTGTTCCTGTGTATCTAAGCGGTGGCTCATGCTTATGAGCAGTATCTGCAGAGCTGAAATTTACAAGTCTGAGAATCTGACCGAGGGATCTGCTTCCTGTGATGATGAAATGGCCTCGGTGGATGACGATCTAGTTATCGAAGATGATGGGTACTTATCGCGGTGTTTGGAAGGAAAGAAGGCAACTGATGTGAGACTTGCAGCAATTGCAGTTGGGACTAGTGCCCGTGGAGGACTGGGAAAACTGTCTATCAGAGGAAGCAATTCTGCTCGCGGTGTCACAGATGTTGGTCTCTCAGCAATTGCTCATGGCTGCCCTTCTCTTAGATCATTTTCTATGTGGAATGTTTCTTCTGTCGGGGATGAGGGTCTGTCCGAAATAGCAAAAGGGTGCCATATGTTGGAGAAGCTTGATATCTGCCAGGCTTCCTCCATTAGCAACAAAAGTCTAATTGCAATAGCTAAGGGCTGCCCCAATTTGACCACCTTAAACATTGAATCGTGTCCTGAGGTTGGAAACGAGGGGTTGCAAGCAATAGCAAGGTCTTGCCCCAAGTTAAAGTGCATCTCTATCAAGGGTTGTCCTCTTGTTGGGGATCATGGAGTATCAAGTCTATTATCATCAGCTGATAACCTTTCAAGGGTAAAGCTTCAGGATTTAAACATTACAGATTTCTCTCTGGCTGTCATTGGTCATTATGGAAAGGCAATTGTAAATTTAGTGCTCTCCGGTCTTCAAAATGTCAGTGAAAGGGGGTTTTGGGTCATGGGTATTGCTCAAGGTCTGCAGAAGCTTGTGTCACTTACAGTTTCCTCATGTCGAGGGATAACAGATGCAAGCATCGAAGCCATAGGTAAAGGTTGCATCCACCTGAAGCAGATGTTTCTGCGCAGGTGTTGTTTAGTGTCTGATAATGGCTTGGTAGCATTTAGCAAAGCTGCAAGGTCTCTCGAGAGCCTGCAGTTGGAGGAGTGTAACAGCATCACCCAGTTTGGGATTATTGGTGCTCTTTCAAACATCAAAACAACATTGAAGTATCTCACCCTTCTGAAGTGTAAAGGAATTAAAGATATAGATGTGGAAGCATCAATGTTTTCTCCCTGTGAGTCTCTCCAACATTTATCCATTCGTAATTGCCCTGGTGTTGGAAATGCTAGCCTCACCATGGTTGGGAAATTGTGTCCCAAACTTCAGCGCGTTGATCTGACTGGACTTTATGGTGTTACTGATGCTGGCCTTCTTCCTCTTGTACAGAATTCTGAGGCTGGGTTGGTCAAGGTGAACCTTGCTGGCTGCGGCAATTTGTCAGACAACATAGTTTCAGAACTGGCCAGGCTACATGGTAGAACACTTGAATTGCTAAATCTTGATGGATGCAGGAAGATTACCGATGCAAGCTTGGTTGCAATTGCAGATAACTGCCTTCTGCTTAAGGATCTAGACATGTCAAAGTGTGCAATCACTGATGCTGGAATAGCTGTTCTTTCTAATGCCAATCGGCTTACTCTGCAAGTGCTTTCTTTGTCAAACTGTTCTGGTATAACTTGCAAGAGTGGACCTTCCCTAACAAATTTAGGCCAGACCTTGGTTGGGTTGAATCTTCAGAATTGCAATTCAATTGGCTGCAACACAGTTGAGTTGCTAGTGGAGAAGTTGTGGAGATGTGACATTCTGGCTTAA 1956 0.4453 MPTLVNYSGDDELYSGASFYQKNLIDLGRVCTLGSSVDGYYCSPRKRARISAPDIFETPRLRKDQKPTIEVLPNECLFEIFRRLSSGKERSSCSCVSKRWLMLMSSICRAEIYKSENLTEGSASCDDEMASVDDDLVIEDDGYLSRCLEGKKATDVRLAAIAVGTSARGGLGKLSIRGSNSARGVTDVGLSAIAHGCPSLRSFSMWNVSSVGDEGLSEIAKGCHMLEKLDICQASSISNKSLIAIAKGCPNLTTLNIESCPEVGNEGLQAIARSCPKLKCISIKGCPLVGDHGVSSLLSSADNLSRVKLQDLNITDFSLAVIGHYGKAIVNLVLSGLQNVSERGFWVMGIAQGLQKLVSLTVSSCRGITDASIEAIGKGCIHLKQMFLRRCCLVSDNGLVAFSKAARSLESLQLEECNSITQFGIIGALSNIKTTLKYLTLLKCKGIKDIDVEASMFSPCESLQHLSIRNCPGVGNASLTMVGKLCPKLQRVDLTGLYGVTDAGLLPLVQNSEAGLVKVNLAGCGNLSDNIVSELARLHGRTLELLNLDGCRKITDASLVAIADNCLLLKDLDMSKCAITDAGIAVLSNANRLTLQVLSLSNCSGITCKSGPSLTNLGQTLVGLNLQNCNSIGCNTVELLVEKLWRCDILA* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0380 651 Pfam Leucine Rich repeat 566 587 IPR001611 GO:0005515
Vra5g0380 651 Pfam Leucine Rich repeat 249 272 IPR001611 GO:0005515
Vra5g0380 651 Pfam Leucine Rich repeat 541 563 IPR001611 GO:0005515
Vra5g0380 651 SUPERFAMILY RNI-like 350 607 - -
Vra5g0380 651 SUPERFAMILY RNI-like 183 422 - -
Vra5g0380 651 Gene3D Ribonuclease Inhibitor 263 347 IPR032675 -
Vra5g0380 651 Gene3D Ribonuclease Inhibitor 142 262 IPR032675 -
Vra5g0380 651 Gene3D Ribonuclease Inhibitor 452 651 IPR032675 -
Vra5g0380 651 SUPERFAMILY F-box domain 64 108 IPR036047 GO:0005515
Vra5g0380 651 PANTHER UNCHARACTERIZED 18 642 - -
Vra5g0380 651 SMART LRR_CC_2 406 431 IPR006553 -
Vra5g0380 651 SMART LRR_CC_2 223 248 IPR006553 -
Vra5g0380 651 SMART LRR_CC_2 249 274 IPR006553 -
Vra5g0380 651 SMART LRR_CC_2 486 511 IPR006553 -
Vra5g0380 651 SMART LRR_CC_2 513 538 IPR006553 -
Vra5g0380 651 SMART LRR_CC_2 197 222 IPR006553 -
Vra5g0380 651 SMART LRR_CC_2 354 379 IPR006553 -
Vra5g0380 651 SMART LRR_CC_2 433 458 IPR006553 -
Vra5g0380 651 SMART LRR_CC_2 380 405 IPR006553 -
Vra5g0380 651 SMART LRR_CC_2 592 620 IPR006553 -
Vra5g0380 651 SMART LRR_CC_2 566 590 IPR006553 -
Vra5g0380 651 SMART LRR_CC_2 540 565 IPR006553 -
Vra5g0380 651 SMART LRR_CC_2 460 485 IPR006553 -
Vra5g0380 651 SMART LRR_CC_2 275 300 IPR006553 -
Vra5g0380 651 Gene3D - 69 109 - -
Vra5g0380 651 PANTHER GRR1 18 642 - -
Vra5g0380 651 Pfam F-box-like 70 101 IPR001810 GO:0005515
Vra5g0380 651 Gene3D Ribonuclease Inhibitor 348 451 IPR032675 -
Vra5g0380 651 SMART fbox_2 72 112 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0380 Vra-Chr5 3933644 3936469 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0380 K14515 - gmx:100792339 1077