Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00745 ATGTTCAGGGTGAGCAACAATCTTGTTGGGGTGCTGAATCTGCTGGCTTTCATTCTCTCGATTCCCATTTTAGTGACGGGCGTGTGGCTGAGCAAGCAAGCGAACACGGAGTGCGAATGGTGGCTGCAAAGAATCTTCATTGTGCTGGGCGTTTTCCTTCTGGTGGTGTCTCTGGCAGGTCTTGTCGGCGCATGTTGTCGTGTCTCATGTCTCCTCTGGCTCTACCTCTTCGTCATGTTCCTGCTCATACTCCTTGTTCTTTCCTTCACCATCTTCGCCTTCGTCGTCACCAACAAGGGTGCCGGTCAAGTCCTTTCCAACCGAGGCTACAAGGAGTACAGGCTCGGTGACTACTCCAACTGGTTTCAGAACAGAGTCAACAACGCTCACAACTGGAACCGAATTCGGAGCTGTCTCCGATCTTCCAAACTCTGCTCCCGATTTCAAACCCAATTCGCCAACGACAATCTGCAAAAGTTCTACGCTGAGAACTTGTCTTCGCTTCAGTCCGGGTGTTGCAAGCCATCAGACAGCTGCAACTTTGAGTACCAGGGTCCATCTGTCTGGAAAAAGACTGAAAGTGCAAATTATTCGAACCCTGACTGCAATGCTTGGGACAATGATCCCAATGTTCTGTGCTTCAATTGCCAAACTTGCAAGGCTGGGTTCCTGCAGAGCCTTAAGACTGACTGGAAGAAGGTGACAATTGTGAATGTCATATTCCTCATCTTCCTCATCATTGTGTACTCTGTTGGTTGCTGCGCATTCCGGAATAACTTGAGAGACAATTGGAAGCGCTAG 801 0.4931 MFRVSNNLVGVLNLLAFILSIPILVTGVWLSKQANTECEWWLQRIFIVLGVFLLVVSLAGLVGACCRVSCLLWLYLFVMFLLILLVLSFTIFAFVVTNKGAGQVLSNRGYKEYRLGDYSNWFQNRVNNAHNWNRIRSCLRSSKLCSRFQTQFANDNLQKFYAENLSSLQSGCCKPSDSCNFEYQGPSVWKKTESANYSNPDCNAWDNDPNVLCFNCQTCKAGFLQSLKTDWKKVTIVNVIFLIFLIIVYSVGCCAFRNNLRDNWKR 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00745 266 Pfam Tetraspanin family 7 255 IPR018499 GO:0016020
Vimu10g00745 266 ProSitePatterns Transmembrane 4 family signature. 50 72 IPR018503 GO:0016020
Vimu10g00745 266 PRINTS Transmembrane four family signature 66 94 - -
Vimu10g00745 266 PRINTS Transmembrane four family signature 39 65 - -
Vimu10g00745 266 PRINTS Transmembrane four family signature 7 30 - -
Vimu10g00745 266 PANTHER TETRASPANIN-8-RELATED 3 262 IPR044991 GO:0009734|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00745 Vimu-Chr10 6481180 6482620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00745 1 264 Miscellaneous Gene Families AT4G28050 63.636 3.68e-127 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00745 - - pvu:PHAVU_009G207500g 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00745 10 6481180 6482620 Vimu10g00745 10 6481180 6482620 ECH
Vimu7g01257 7 11961821 11963987 Vimu10g00745 10 6481180 6482620 PCT