Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02380 ATGTTCCGTATTAATGAGGCTCTATATGCTTACCTTCTTGCTACTTTCTTTGTTATATTGGGATTCATGTTGTTTACTGTTTTTGCATTGTTTGTTACTAATGGTCATCAAAAGGTGTCTGATAAAGGAATTGGGGAATATAGAGTTGCGGATTTTTCGCTTTGGTTGCAACAATATGTTATTAATGATAAAAATTGGAATGATATTAAGAGTTGTTTGGTTGGTGTAGGTTTGTGTCAACGGAATTTCTCCATCGCGCAGGTTGGATGCTGTAAACCACCTTTGCAATGTGGATTCACAATGAAAAATGCAACATTCTGGGAAGTACCGAAAACAGGTCCATTAGCGAACGATACAGATTGTGGGACTTGGAAAAATAGACAGGACAAGCTATGTTATGATTGCAATTCATGCAAAGGAGAAGTGCTTGCTAACATAAGGAAGCAATGGAGATATCTCACTATATTCAATGTGTGTGTGCTTATACTTCTCACTAGCATATATGTCTTAGGTTGCTATGCCATCAGGAATAATCGAATAGACCAACATTTGGAGTACCATCCATATCGAATCAATCACCCATAA 585 0.3709 MFRINEALYAYLLATFFVILGFMLFTVFALFVTNGHQKVSDKGIGEYRVADFSLWLQQYVINDKNWNDIKSCLVGVGLCQRNFSIAQVGCCKPPLQCGFTMKNATFWEVPKTGPLANDTDCGTWKNRQDKLCYDCNSCKGEVLANIRKQWRYLTIFNVCVLILLTSIYVLGCYAIRNNRIDQHLEYHPYRINHP 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02380 194 PANTHER TETRASPANIN-8-RELATED 2 181 IPR044991 GO:0009734|GO:0016020
Trre11g02380 194 Pfam Tetraspanin family 8 169 IPR018499 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02380 Trre-Chr11 28355181 28356544 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02380 2 183 Miscellaneous Gene Families AT1G18520 43.564 6.74e-53 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02380 - - tpra:123914931 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g02380 11 28355181 28356544 Trre11g02380 11 28355181 28356544 ECH
Trre15g05397 15 63054980 63056762 Trre11g02380 11 28355181 28356544 PCT