Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g1574 . . . . . . Aed11g1094 . . . . . . . . . . . . Apr7g0298 . . . . . . . . . . Cca06g01148 . . . . . . . . . Gma11g00814 Gma01g01596 . . Gso11g0751 Gso11g0751 . . . . . . . . . . . . . . . . . . . . . . . . . . Lja2g0662 . Mal6g0858 . . . . . . . Mtr5g1013 . . . . . . . Psa2g3340 . . . . . . . . . . . . . . . . . Ssu2g2131 . Sto6g4060 . . . . . Tsu05g00982 . . . . . . . . . . . Vra11g0892 .
Vvi4g1575 . . . . . . Aed11g1093 . . . . . Aip05g00275 . . . . . . Apr7g0299 . . . . . . Bva08g00991 . . . Cca06g01147 . . . . . . . . . Gma11g00815 Gma01g01595 . . Gso11g0752 Gso11g0752 . . . . . . . . . . . . . . . . . . . . . . . . . . Lja2g0663 . Mal6g0857 . . . . . . . Mtr5g1014 . . . . . . . Psa2g3339 . . . . . . . . . . . . . . . . . Ssu2g2130 . Sto6g4061 Sto11g1359 Tpr2g1240 . . . Tsu05g00984 . . . . . . . . . . . Vra11g0893 .
Vvi4g1576 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1577 . . . . . . Aed11g1092 . . . . . . . . . . . . Apr7g0300 . . . . . . . . . . Cca06g01146 . . . . . . . . . Gma11g00817 Gma01g01593 . . Gso11g0753 Gso11g0753 . . . . . . . . . . . . . . . Lapu2g00993 . Lasa2g03576 . . . . . . . . Lja2g0665 . Mal6g0855 . . Mepo5g01143 . Mesa17g01209 . . Mtr5g1016 . . . . Phco4g00727 . . Psa2g3336 . . Pste1g03494 . . . . . . . Pvu2g1239 . Rops1g01417 . Seca10g01140 . Spst2g01040 Ssu2g2128 . Sto6g4063 . Tpr2g1241 . . Trre9g01467 Tsu05g00985 . . Vian10g00924 . Vifa1g06256 . Vimu7g03236 . Viun2g01684 . . Vra11g0895 .
Vvi4g1578 . . . . . . Aed11g1091 Aed7g1332 Aev05g0293 . . . Aip05g00280 . . . . . Apr3g0448 Apr7g0301 . . . . . . Bva08g00992 . . . Cca06g01145 Cca11g00992 . . . . . . . . Gma11g00818 Gma01g01592 . . Gso11g0754 Gso11g0754 . . . . . . . . . . . . . . . . . . . . . . . . . . Lja2g0669 Lja4g3023 Mal6g0853 Mal5g3198 . . . . . . Mtr5g1017 Mtr8g2278 . . . . . . Psa2g3335 Psa4g2492 . . . . . . . . . . . . . . . . Ssu2g2126 Ssu5g0857 Sto6g4064 Sto11g1357 Tpr2g1242 Tpr4g4414 . . Tsu05g00986 Tsu04g02724 . . . . . . . . . . Vra11g0899 .
Vvi4g1579 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1580 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g0001 . . . . Adu01g02993 . Aed6g2259 . . . . . . . . . . . Apr9g2354 . Arst1g03872 . Bach5g01021 . . . . . . . Cca11g02649 . . . . . . . . . Gma17g00357 Gma07g02256 . . Gso17g0318 Gso17g0318 . . Lal14g1600 . . . . . Lan12g0917 . . . . . Lapu3g00377 . Lasa4g03947 . . . . . . . . . Lja4g1405 . Mal5g4994 . Mepo1g00631 . Mesa29g00604 . . . Mtr4g4505 . . . Phco8g02084 . . . . . Pste6g03907 . . . . . . . Pvu3g1237 . . . . . Spst3g02890 . . . . . Tpr2g3570 . Trre15g04989 . Tsu04g04371 . . . . . Vimu7g01656 . . . Vivi1g00938 . Vra7g2730 .
Vvi5g0002 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva05g01224 . Car07g00461 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g0003 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 570 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi4g1574 Chr4 23766318 23766770 -
Aed Aed11g1094 Chr11 16563848 16564279 +
Apr Apr7g0298 Chr7 8338733 8340569 -
Cca Cca06g01148 Chr06 25771590 25772910 +
Gma Gma11g00814 Chr11 6837368 6839441 -
Gma Gma01g01596 Chr01 51565239 51566887 +
Gso Gso11g0751 Chr11 6772689 6774743 -
Gso Gso11g0751 Chr11 6772689 6774743 -
Lja Lja2g0662 Chr2 6013871 6015977 -
Mal Mal6g0858 Chr6 12837801 12838232 +
Mtr Mtr5g1013 Chr5 10144784 10146689 -
Psa Psa2g3340 Chr2 375834864 375836487 +
Ssu Ssu2g2131 Chr2 76985941 76986438 +
Sto Sto6g4060 Chr6 44245942 44248669 -
Tsu Tsu05g00982 Chr05 8520472 8522256 -
Vra Vra11g0892 Chr11 7672113 7673339 -
Vvi Vvi4g1575 Chr4 23774894 23777420 +
Aed Aed11g1093 Chr11 16557091 16560725 -
Aip Aip05g00275 Chr05 3052072 3056049 +
Apr Apr7g0299 Chr7 8342385 8345770 +
Bva Bva08g00991 Chr08 5050608 5053893 +
Cca Cca06g01147 Chr06 25761890 25766040 -
Gma Gma11g00815 Chr11 6851959 6855446 +
Gma Gma01g01595 Chr01 51550886 51555168 -
Gso Gso11g0752 Chr11 6786461 6790025 +
Gso Gso11g0752 Chr11 6786461 6790025 +
Lja Lja2g0663 Chr2 6017352 6021450 +
Mal Mal6g0857 Chr6 12810272 12813528 -
Mtr Mtr5g1014 Chr5 10148133 10152097 -
Psa Psa2g3339 Chr2 375785942 375789021 +
Ssu Ssu2g2130 Chr2 76970303 76973356 -
Sto Sto6g4061 Chr6 44255327 44258247 +
Sto Sto11g1359 Chr11 13147052 13151213 -
Tpr Tpr2g1240 Chr2 14533434 14546067 -
Tsu Tsu05g00984 Chr05 8525221 8529648 -
Vra Vra11g0893 Chr11 7679626 7682930 +
Vvi Vvi4g1576 Chr4 23784004 23784476 -
Vvi Vvi4g1577 Chr4 23794903 23796634 -
Aed Aed11g1092 Chr11 16553500 16558310 +
Apr Apr7g0300 Chr7 8360029 8361774 -
Cca Cca06g01146 Chr06 25734562 25737406 +
Gma Gma11g00817 Chr11 6860187 6861826 -
Gma Gma01g01593 Chr01 51540536 51543025 +
Gso Gso11g0753 Chr11 6794541 6796507 -
Gso Gso11g0753 Chr11 6794541 6796507 -
Lapu Lapu2g00993 Chr2 9260311 9261269 +
Lasa Lasa2g03576 Chr2 542583514 542585299 +
Lja Lja2g0665 Chr2 6024586 6026091 -
Mal Mal6g0855 Chr6 12760916 12763225 +
Mepo Mepo5g01143 Chr5 11583738 11586574 -
Mesa Mesa17g01209 Chr17 15566081 15568339 -
Mtr Mtr5g1016 Chr5 10170848 10173527 -
Phco Phco4g00727 Chr4 5565281 5566623 +
Psa Psa2g3336 Chr2 375507020 375509427 +
Pste Pste1g03494 Chr1 16337731 16340099 -
Pvu Pvu2g1239 Chr2 24292209 24294008 -
Rops Rops1g01417 Chr1 31347462 31356434 +
Seca Seca10g01140 Chr10 10998779 11000941 -
Spst Spst2g01040 Chr2 9091313 9096540 -
Ssu Ssu2g2128 Chr2 76943193 76945031 +
Sto Sto6g4063 Chr6 44260994 44262080 -
Tpr Tpr2g1241 Chr2 14553075 14555499 -
Trre Trre9g01467 Chr9 12556576 12559320 -
Tsu Tsu05g00985 Chr05 8540116 8542489 -
Vian Vian10g00924 Chr10 9564316 9565845 -
Vifa Vifa1g06256 Chr1 975752103 975753645 -
Vimu Vimu7g03236 Chr7 27422005 27422544 -
Viun Viun2g01684 Chr2 26418835 26420224 +
Vra Vra11g0895 Chr11 7685956 7687278 -
Vvi Vvi4g1578 Chr4 23798951 23815329 -
Aed Aed11g1091 Chr11 16544447 16553159 +
Aed Aed7g1332 Chr7 11131029 11142622 -
Aev Aev05g0293 Chr05 2156681 2164365 -
Aip Aip05g00280 Chr05 3068013 3074547 -
Apr Apr3g0448 Chr3 9046962 9068006 -
Apr Apr7g0301 Chr7 8364223 8373545 -
Bva Bva08g00992 Chr08 5054746 5062889 -
Cca Cca06g01145 Chr06 25716329 25726409 -
Cca Cca11g00992 Chr11 21788421 21798314 -
Gma Gma11g00818 Chr11 6863622 6872096 -
Gma Gma01g01592 Chr01 51519334 51529164 +
Gso Gso11g0754 Chr11 6798130 6807498 -
Gso Gso11g0754 Chr11 6798130 6807498 -
Lja Lja2g0669 Chr2 6056721 6066433 -
Lja Lja4g3023 Chr4 56582348 56597915 +
Mal Mal6g0853 Chr6 12747436 12754650 +
Mal Mal5g3198 Chr5 93866403 93875162 +
Mtr Mtr5g1017 Chr5 10175249 10183580 -
Mtr Mtr8g2278 Chr8 33076280 33085544 +
Psa Psa2g3335 Chr2 375488184 375495764 +
Psa Psa4g2492 Chr4 200871134 200879569 -
Ssu Ssu2g2126 Chr2 76898973 76907723 +
Ssu Ssu5g0857 Chr5 22542646 22552035 -
Sto Sto6g4064 Chr6 44263852 44272292 -
Sto Sto11g1357 Chr11 13134309 13139218 +
Tpr Tpr2g1242 Chr2 14556858 14564333 -
Tpr Tpr4g4414 Chr4 51566219 51574685 -
Tsu Tsu05g00986 Chr05 8545646 8551748 -
Tsu Tsu04g02724 Chr04 31179962 31187938 -
Vra Vra11g0899 Chr11 7705824 7714715 -
Vvi Vvi4g1579 Chr4 23835451 23843308 +
Vvi Vvi4g1580 Chr4 23845005 23853595 -
Vvi Vvi5g0001 Chr5 1661 4454 -
Adu Adu01g02993 Chr01 100748364 100756185 +
Aed Aed6g2259 Chr6 24658597 24669050 +
Apr Apr9g2354 Chr9 31167033 31176611 -
Arst Arst1g03872 Chr1 100015872 100023728 +
Bach Bach5g01021 Chr5 7198123 7208757 +
Cca Cca11g02649 Chr11 53760323 53769973 +
Gma Gma17g00357 Chr17 2881387 2901311 -
Gma Gma07g02256 Chr07 45318646 45350111 -
Gso Gso17g0318 Chr17 2841202 2846369 -
Gso Gso17g0318 Chr17 2841202 2846369 -
Lal Lal14g1600 Chr14 16476917 16485770 -
Lan Lan12g0917 Chr12 16111078 16120333 -
Lapu Lapu3g00377 Chr3 3857472 3867157 -
Lasa Lasa4g03947 Chr4 635223555 635231984 -
Lja Lja4g1405 Chr4 12682113 12691456 -
Mal Mal5g4994 Chr5 123507855 123516849 -
Mepo Mepo1g00631 Chr1 5979741 5989527 +
Mesa Mesa29g00604 Chr29 7708347 7719773 +
Mtr Mtr4g4505 Chr4 59075011 59089259 -
Phco Phco8g02084 Chr8 22188603 22197362 +
Pste Pste6g03907 Chr6 28291513 28294849 +
Pvu Pvu3g1237 Chr3 29786296 29795518 -
Spst Spst3g02890 Chr3 78409275 78411367 +
Tpr Tpr2g3570 Chr2 38841429 38849632 +
Trre Trre15g04989 Chr15 59857162 59865527 -
Tsu Tsu04g04371 Chr04 51632406 51640652 -
Vimu Vimu7g01656 Chr7 15359980 15370564 +
Vivi Vivi1g00938 Chr1 19662164 19670984 +
Vra Vra7g2730 Chr7 47497421 47506897 +
Vvi Vvi5g0002 Chr5 10569 12724 -
Bva Bva05g01224 Chr05 6368034 6377617 +
Car Car07g00461 Chr07 4020909 4030838 +
Vvi Vvi5g0003 Chr5 18119 18457 +
Gma Gma17g00357 Chr17 2881387 2901311 -
Gma Gma07g02256 Chr07 45318646 45350111 -
Gso Gso17g0318 Chr17 2841202 2846369 -
Gso Gso17g0318 Chr17 2841202 2846369 -
Adu Adu01g02993 Chr01 100748364 100756185 +
Aed Aed6g2259 Chr6 24658597 24669050 +
Apr Apr9g2354 Chr9 31167033 31176611 -
Arst Arst1g03872 Chr1 100015872 100023728 +
Bach Bach5g01021 Chr5 7198123 7208757 +
Bva Bva05g01224 Chr05 6368034 6377617 +
Car Car07g00461 Chr07 4020909 4030838 +
Cca Cca11g02649 Chr11 53760323 53769973 +
Lal Lal14g1600 Chr14 16476917 16485770 -
Lan Lan12g0917 Chr12 16111078 16120333 -
Lapu Lapu3g00377 Chr3 3857472 3867157 -
Lasa Lasa4g03947 Chr4 635223555 635231984 -
Lja Lja4g1405 Chr4 12682113 12691456 -
Mal Mal5g4994 Chr5 123507855 123516849 -
Mepo Mepo1g00631 Chr1 5979741 5989527 +
Mesa Mesa29g00604 Chr29 7708347 7719773 +
Mtr Mtr4g4505 Chr4 59075011 59089259 -
Phco Phco8g02084 Chr8 22188603 22197362 +
Pste Pste6g03907 Chr6 28291513 28294849 +
Pvu Pvu3g1237 Chr3 29786296 29795518 -
Spst Spst3g02890 Chr3 78409275 78411367 +
Tpr Tpr2g3570 Chr2 38841429 38849632 +
Trre Trre15g04989 Chr15 59857162 59865527 -
Tsu Tsu04g04371 Chr04 51632406 51640652 -
Vimu Vimu7g01656 Chr7 15359980 15370564 +
Vivi Vivi1g00938 Chr1 19662164 19670984 +
Vra Vra7g2730 Chr7 47497421 47506897 +